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UTP3 (UTP3, small subunit processome component homolog (S. cerevisiae))

Identity

Alias_namesUTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ23256
DKFZp761F222
SAS10
CRLZ1
Other aliasCRL1
HGNC (Hugo) UTP3
LocusID (NCBI) 57050
Atlas_Id 75575
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70688479 and ends at 70690551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RTN4 (2p16.1) / UTP3 (4q13.3)UTP3 (4q13.3) / SQSTM1 (5q35.3)UTP3 (4q13.3) / UTP3 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTP3   24477
Cards
Entrez_Gene (NCBI)UTP3  57050  UTP3, small subunit processome component homolog (S. cerevisiae)
AliasesCRL1; CRLZ1; SAS10
GeneCards (Weizmann)UTP3
Ensembl hg19 (Hinxton)ENSG00000132467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132467 [Gene_View]  chr4:70688479-70690551 [Contig_View]  UTP3 [Vega]
ICGC DataPortalENSG00000132467
TCGA cBioPortalUTP3
AceView (NCBI)UTP3
Genatlas (Paris)UTP3
WikiGenes57050
SOURCE (Princeton)UTP3
Genetics Home Reference (NIH)UTP3
Genomic and cartography
GoldenPath hg38 (UCSC)UTP3  -     chr4:70688479-70690551 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTP3  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblUTP3 - 4q13.3 [CytoView hg19]  UTP3 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIUTP3 [Mapview hg19]  UTP3 [Mapview hg38]
OMIM611614   
Gene and transcription
Genbank (Entrez)AF271212 AK026909 AL136590 AM392862 AM393072
RefSeq transcript (Entrez)NM_020368
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UTP3
Cluster EST : UnigeneHs.322901 [ NCBI ]
CGAP (NCI)Hs.322901
Alternative Splicing GalleryENSG00000132467
Gene ExpressionUTP3 [ NCBI-GEO ]   UTP3 [ EBI - ARRAY_EXPRESS ]   UTP3 [ SEEK ]   UTP3 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57050
GTEX Portal (Tissue expression)UTP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQZ2
Splice isoforms : SwissVarQ9NQZ2
PhosPhoSitePlusQ9NQZ2
Domains : Interpro (EBI)Sas10/Utp3/C1D    Sas10_C_dom   
Domain families : Pfam (Sanger)Sas10 (PF09368)    Sas10_Utp3 (PF04000)   
Domain families : Pfam (NCBI)pfam09368    pfam04000   
Conserved Domain (NCBI)UTP3
DMDM Disease mutations57050
Blocks (Seattle)UTP3
SuperfamilyQ9NQZ2
Human Protein AtlasENSG00000132467
Peptide AtlasQ9NQZ2
HPRD18016
IPIIPI00006900   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQZ2
IntAct (EBI)Q9NQZ2
FunCoupENSG00000132467
BioGRIDUTP3
STRING (EMBL)UTP3
ZODIACUTP3
Ontologies - Pathways
QuickGOQ9NQZ2
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  nucleolus  rRNA processing  brain development  covalent chromatin modification  small-subunit processome  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  nucleolus  rRNA processing  brain development  covalent chromatin modification  small-subunit processome  
NDEx NetworkUTP3
Atlas of Cancer Signalling NetworkUTP3
Wikipedia pathwaysUTP3
Orthology - Evolution
OrthoDB57050
GeneTree (enSembl)ENSG00000132467
Phylogenetic Trees/Animal Genes : TreeFamUTP3
HOVERGENQ9NQZ2
HOGENOMQ9NQZ2
Homologs : HomoloGeneUTP3
Homology/Alignments : Family Browser (UCSC)UTP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP3
dbVarUTP3
ClinVarUTP3
1000_GenomesUTP3 
Exome Variant ServerUTP3
ExAC (Exome Aggregation Consortium)UTP3 (select the gene name)
Genetic variants : HAPMAP57050
Genomic Variants (DGV)UTP3 [DGVbeta]
DECIPHERUTP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTP3 
Mutations
ICGC Data PortalUTP3 
TCGA Data PortalUTP3 
Broad Tumor PortalUTP3
OASIS PortalUTP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTP3
DgiDB (Drug Gene Interaction Database)UTP3
DoCM (Curated mutations)UTP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP3 (select a term)
intoGenUTP3
Cancer3DUTP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611614   
Orphanet
MedgenUTP3
Genetic Testing Registry UTP3
NextProtQ9NQZ2 [Medical]
TSGene57050
GENETestsUTP3
Huge Navigator UTP3 [HugePedia]
snp3D : Map Gene to Disease57050
BioCentury BCIQUTP3
ClinGenUTP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57050
Chemical/Pharm GKB GenePA162408779
Clinical trialUTP3
Miscellaneous
canSAR (ICR)UTP3 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP3
EVEXUTP3
GoPubMedUTP3
iHOPUTP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:01:04 CEST 2017

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