| Nomenclature |
|---|
| HGNC (Hugo) | UTP4 1983 |
| Cards |
|---|
| Entrez_Gene (NCBI) | UTP4 84916 UTP4, small subunit processome component |
| Aliases | CIRH1A; CIRHIN; NAIC; TEX292 |
| GeneCards (Weizmann) | UTP4 |
| Ensembl hg19 (Hinxton) | ENSG00000141076 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000141076 [Gene_View] ENSG00000141076 [Sequence] chr16:69132596-69169034 [Contig_View] UTP4 [Vega] |
| ICGC DataPortal | ENSG00000141076 |
| TCGA cBioPortal | UTP4 |
| AceView (NCBI) | UTP4 |
| Genatlas (Paris) | UTP4 |
| WikiGenes | 84916 |
| SOURCE (Princeton) | UTP4 |
| Genetics Home Reference (NIH) | UTP4 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | UTP4 - chr16:69132596-69169034 + 16q22.1 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | UTP4 - 16q22.1 [Description] (hg19-Feb_2009) |
| Ensembl | UTP4 - 16q22.1 [CytoView hg19] UTP4 - 16q22.1 [CytoView hg38] |
| Mapping of homologs : NCBI | UTP4 [Mapview hg19] UTP4 [Mapview hg38] |
| OMIM | 607456 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB075868 AK027419 AK027445 AK027584 AK027634 |
| RefSeq transcript (Entrez) | NM_001318391 NM_032830 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | UTP4 |
| Cluster EST : Unigene | Hs.461113 [ NCBI ] |
| CGAP (NCI) | Hs.461113 |
| Alternative Splicing Gallery | ENSG00000141076 |
| Gene Expression | UTP4 [ NCBI-GEO ] UTP4 [ EBI - ARRAY_EXPRESS ]
UTP4 [ SEEK ] UTP4 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | UTP4 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 84916 |
| GTEX Portal (Tissue expression) | UTP4 |
| Human Protein Atlas | ENSG00000141076-UTP4 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q969X6 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q969X6 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q969X6 |
| Splice isoforms : SwissVar | Q969X6 |
| PhosPhoSitePlus | Q969X6 |
| Domaine pattern : Prosite (Expaxy) | WD_REPEATS_REGION (PS50294) |
| Domains : Interpro (EBI) | WD40/YVTN_repeat-like_dom_sf WD40_repeat WD40_repeat_dom WD40_repeat_dom_sf |
| Domain families : Pfam (Sanger) | WD40 (PF00400) |
| Domain families : Pfam (NCBI) | pfam00400 |
| Domain families : Smart (EMBL) | WD40 (SM00320) |
| Conserved Domain (NCBI) | UTP4 |
| DMDM Disease mutations | 84916 |
| Blocks (Seattle) | UTP4 |
| Superfamily | Q969X6 |
| Human Protein Atlas [tissue] | ENSG00000141076-UTP4 [tissue] |
| Peptide Atlas | Q969X6 |
| IPI | IPI00239815 IPI00399195 IPI00399197 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q969X6 |
| IntAct (EBI) | Q969X6 |
| FunCoup | ENSG00000141076 |
| BioGRID | UTP4 |
| STRING (EMBL) | UTP4 |
| ZODIAC | UTP4 |
| Ontologies - Pathways |
|---|
| QuickGO | Q969X6 |
| Ontology : AmiGO | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) fibrillar center RNA binding protein binding nucleoplasm chromosome nucleolus regulation of transcription, DNA-templated rRNA processing maturation of SSU-rRNA 90S preribosome small-subunit processome t-UTP complex t-UTP complex |
| Ontology : EGO-EBI | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) fibrillar center RNA binding protein binding nucleoplasm chromosome nucleolus regulation of transcription, DNA-templated rRNA processing maturation of SSU-rRNA 90S preribosome small-subunit processome t-UTP complex t-UTP complex |
| NDEx Network | UTP4 |
| Atlas of Cancer Signalling Network | UTP4 |
| Wikipedia pathways | UTP4 |
| Orthology - Evolution |
|---|
| OrthoDB | 84916 |
| GeneTree (enSembl) | ENSG00000141076 |
| Phylogenetic Trees/Animal Genes : TreeFam | UTP4 |
| HOVERGEN | Q969X6 |
| HOGENOM | Q969X6 |
| Homologs : HomoloGene | UTP4 |
| Homology/Alignments : Family Browser (UCSC) | UTP4 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | UTP4 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | UTP4 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | UTP4 |
| dbVar | UTP4 |
| ClinVar | UTP4 |
| 1000_Genomes | UTP4 |
| Exome Variant Server | UTP4 |
| ExAC (Exome Aggregation Consortium) | ENSG00000141076 |
| GNOMAD Browser | ENSG00000141076 |
| Varsome Browser | UTP4 |
| Genetic variants : HAPMAP | 84916 |
| Genomic Variants (DGV) | UTP4 [DGVbeta] |
| DECIPHER | UTP4 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | UTP4 |
| Mutations |
|---|
| ICGC Data Portal | UTP4 |
| TCGA Data Portal | UTP4 |
| Broad Tumor Portal | UTP4 |
| OASIS Portal | UTP4 [ Somatic mutations - Copy number] |
| Mutations and Diseases : HGMD | UTP4 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search UTP4 |
| DgiDB (Drug Gene Interaction Database) | UTP4 |
| DoCM (Curated mutations) | UTP4 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | UTP4 (select a term) |
| intoGen | UTP4 |
| Cancer3D | UTP4(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 607456 |
| Orphanet | |
| DisGeNET | UTP4 |
| Medgen | UTP4 |
| Genetic Testing Registry | UTP4
|
| NextProt | Q969X6 [Medical] |
| TSGene | 84916 |
| GENETests | UTP4 |
| Target Validation | UTP4 |
| Huge Navigator |
UTP4 [HugePedia] |
| snp3D : Map Gene to Disease | 84916 |
| BioCentury BCIQ | UTP4 |
| ClinGen | UTP4 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 84916 |
| Chemical/Pharm GKB Gene | PA26520 |
| Clinical trial | UTP4 |
| Miscellaneous |
|---|
| canSAR (ICR) | UTP4 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 40 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | UTP4 |
| EVEX | UTP4 |
| GoPubMed | UTP4 |
| iHOP | UTP4 |
