| Nomenclature |
HGNC (Hugo) | UTP4 1983 |
| Cards |
Entrez_Gene (NCBI) | UTP4 84916 UTP4, small subunit processome component |
Aliases | CIRH1A; CIRHIN; NAIC; TEX292 |
GeneCards (Weizmann) | UTP4 |
Ensembl hg19 (Hinxton) | ENSG00000141076 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000141076 [Gene_View]  ENSG00000141076 [Sequence] chr16:69132596-69169034 [Contig_View] UTP4 [Vega] |
ICGC DataPortal | ENSG00000141076 |
TCGA cBioPortal | UTP4 |
AceView (NCBI) | UTP4 |
Genatlas (Paris) | UTP4 |
WikiGenes | 84916 |
SOURCE (Princeton) | UTP4 |
Genetics Home Reference (NIH) | UTP4 |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | UTP4 - chr16:69132596-69169034 + 16q22.1 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | UTP4 - 16q22.1 [Description] (hg19-Feb_2009) |
Ensembl | UTP4 - 16q22.1 [CytoView hg19] UTP4 - 16q22.1 [CytoView hg38] |
Mapping of homologs : NCBI | UTP4 [Mapview hg19] UTP4 [Mapview hg38] |
OMIM | 607456 |
| Gene and transcription |
Genbank (Entrez) | AB075868 AK027419 AK027445 AK027584 AK027634 |
RefSeq transcript (Entrez) | NM_001318391 NM_032830 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | UTP4 |
Cluster EST : Unigene | Hs.461113 [ NCBI ] |
CGAP (NCI) | Hs.461113 |
Alternative Splicing Gallery | ENSG00000141076 |
Gene Expression | UTP4 [ NCBI-GEO ] UTP4 [ EBI - ARRAY_EXPRESS ]
UTP4 [ SEEK ] UTP4 [ MEM ] |
Gene Expression Viewer (FireBrowse) | UTP4 [ Firebrowse - Broad ] |
SOURCE (Princeton) | Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60] |
Genevestigator | Expression in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 84916 |
GTEX Portal (Tissue expression) | UTP4 |
Human Protein Atlas | ENSG00000141076-UTP4 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q969X6 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q969X6 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q969X6 |
Splice isoforms : SwissVar | Q969X6 |
PhosPhoSitePlus | Q969X6 |
Domaine pattern : Prosite (Expaxy) | WD_REPEATS_REGION (PS50294) |
Domains : Interpro (EBI) | WD40/YVTN_repeat-like_dom_sf WD40_repeat WD40_repeat_dom WD40_repeat_dom_sf |
Domain families : Pfam (Sanger) | WD40 (PF00400) |
Domain families : Pfam (NCBI) | pfam00400 |
Domain families : Smart (EMBL) | WD40 (SM00320) |
Conserved Domain (NCBI) | UTP4 |
DMDM Disease mutations | 84916 |
Blocks (Seattle) | UTP4 |
Superfamily | Q969X6 |
Human Protein Atlas [tissue] | ENSG00000141076-UTP4 [tissue] |
Peptide Atlas | Q969X6 |
IPI | IPI00239815 IPI00399195 IPI00399197 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q969X6 |
IntAct (EBI) | Q969X6 |
FunCoup | ENSG00000141076 |
BioGRID | UTP4 |
STRING (EMBL) | UTP4 |
ZODIAC | UTP4 |
| Ontologies - Pathways |
QuickGO | Q969X6 |
Ontology : AmiGO | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) fibrillar center RNA binding protein binding nucleoplasm chromosome nucleolus regulation of transcription, DNA-templated rRNA processing maturation of SSU-rRNA 90S preribosome small-subunit processome t-UTP complex t-UTP complex |
Ontology : EGO-EBI | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) fibrillar center RNA binding protein binding nucleoplasm chromosome nucleolus regulation of transcription, DNA-templated rRNA processing maturation of SSU-rRNA 90S preribosome small-subunit processome t-UTP complex t-UTP complex |
NDEx Network | UTP4 |
Atlas of Cancer Signalling Network | UTP4 |
Wikipedia pathways | UTP4 |
| Orthology - Evolution |
OrthoDB | 84916 |
GeneTree (enSembl) | ENSG00000141076 |
Phylogenetic Trees/Animal Genes : TreeFam | UTP4 |
HOGENOM | Q969X6 |
Homologs : HomoloGene | UTP4 |
Homology/Alignments : Family Browser (UCSC) | UTP4 |
| Gene fusions - Rearrangements |
Fusion : Quiver | UTP4 |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | UTP4 [hg38] |
dbSNP Single Nucleotide Polymorphism (NCBI) | UTP4 |
dbVar | UTP4 |
ClinVar | UTP4 |
1000_Genomes | UTP4 |
Exome Variant Server | UTP4 |
ExAC (Exome Aggregation Consortium) | ENSG00000141076 |
GNOMAD Browser | ENSG00000141076 |
Varsome Browser | UTP4 |
Genetic variants : HAPMAP | 84916 |
Genomic Variants (DGV) | UTP4 [DGVbeta] |
DECIPHER | UTP4 [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | UTP4 |
| Mutations |
ICGC Data Portal | UTP4 |
TCGA Data Portal | UTP4 |
Broad Tumor Portal | UTP4 |
OASIS Portal | UTP4 [ Somatic mutations - Copy number] |
Mutations and Diseases : HGMD | UTP4 |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search UTP4 |
DgiDB (Drug Gene Interaction Database) | UTP4 |
DoCM (Curated mutations) | UTP4 (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | UTP4 (select a term) |
intoGen | UTP4 |
Cancer3D | UTP4(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | 607456 |
Orphanet | |
DisGeNET | UTP4 |
Medgen | UTP4 |
Genetic Testing Registry | UTP4
|
NextProt | Q969X6 [Medical] |
TSGene | 84916 |
GENETests | UTP4 |
Target Validation | UTP4 |
Huge Navigator |
UTP4 [HugePedia] |
snp3D : Map Gene to Disease | 84916 |
BioCentury BCIQ | UTP4 |
ClinGen | UTP4 |
| Clinical trials, drugs, therapy |
---|
Chemical/Protein Interactions : CTD | 84916 |
Chemical/Pharm GKB Gene | PA26520 |
Clinical trial | UTP4 |
| Miscellaneous |
---|
canSAR (ICR) | UTP4 (select the gene name) |
DataMed Index | UTP4 |
| Probes |
---|
| Litterature |
---|
PubMed | 42 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
CoreMine | UTP4 |
EVEX | UTP4 |
GoPubMed | UTP4 |
iHOP | UTP4 |