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UTP6 (UTP6 small subunit processome component)

Identity

Alias (NCBI)C17orf40
HCA66
HGNC (Hugo) UTP6
HGNC Alias symbHCA66
HGNC Alias namehepatocellular carcinoma associated antigen 66
HGNC Previous nameC17orf40
HGNC Previous namechromosome 17 open reading frame 40
 UTP6, small subunit (SSU) processome component, homolog (yeast)
LocusID (NCBI) 55813
Atlas_Id 40795
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 31860904 and ends at 31901708 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCUN1D1 (3q26.33) / UTP6 (17q11.2)GLUD1 (10q23.2) / UTP6 (17q11.2)MDM4 (1q32.1) / UTP6 (17q11.2)
SUPT6H (17q11.2) / UTP6 (17q11.2)UTP6 (17q11.2) / CDC6 (17q21.2)UTP6 (17q11.2) / MIR205HG (1q32.2)
SUPT6H 17q11.2 / UTP6 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)UTP6   18279
Cards
Entrez_Gene (NCBI)UTP6    UTP6 small subunit processome component
AliasesC17orf40; HCA66
GeneCards (Weizmann)UTP6
Ensembl hg19 (Hinxton)ENSG00000108651 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108651 [Gene_View]  ENSG00000108651 [Sequence]  chr17:31860904-31901708 [Contig_View]  UTP6 [Vega]
ICGC DataPortalENSG00000108651
TCGA cBioPortalUTP6
AceView (NCBI)UTP6
Genatlas (Paris)UTP6
SOURCE (Princeton)UTP6
Genetics Home Reference (NIH)UTP6
Genomic and cartography
GoldenPath hg38 (UCSC)UTP6  -     chr17:31860904-31901708 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTP6  -     17q11.2   [Description]    (hg19-Feb_2009)
GoldenPathUTP6 - 17q11.2 [CytoView hg19]  UTP6 - 17q11.2 [CytoView hg38]
ImmunoBaseENSG00000108651
Genome Data Viewer NCBIUTP6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF116631 AF244135 AF334386 AJ272197 AK057202
RefSeq transcript (Entrez)NM_018428
Consensus coding sequences : CCDS (NCBI)UTP6
Gene ExpressionUTP6 [ NCBI-GEO ]   UTP6 [ EBI - ARRAY_EXPRESS ]   UTP6 [ SEEK ]   UTP6 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP6 [ Firebrowse - Broad ]
GenevisibleExpression of UTP6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55813
GTEX Portal (Tissue expression)UTP6
Human Protein AtlasENSG00000108651-UTP6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYH9
PhosPhoSitePlusQ9NYH9
Domains : Interpro (EBI)HAT    TPR-like_helical_dom_sf    Utp6   
Domain families : Pfam (Sanger)U3_assoc_6 (PF08640)   
Domain families : Pfam (NCBI)pfam08640   
Domain families : Smart (EMBL)HAT (SM00386)  
Conserved Domain (NCBI)UTP6
SuperfamilyQ9NYH9
AlphaFold pdb e-kbQ9NYH9   
Human Protein Atlas [tissue]ENSG00000108651-UTP6 [tissue]
HPRD11020
Protein Interaction databases
DIP (DOE-UCLA)Q9NYH9
IntAct (EBI)Q9NYH9
BioGRIDUTP6
STRING (EMBL)UTP6
ZODIACUTP6
Ontologies - Pathways
QuickGOQ9NYH9
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  nucleoplasm  chromosome  nucleolus  rRNA processing  snoRNA binding  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  nucleoplasm  chromosome  nucleolus  rRNA processing  snoRNA binding  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkUTP6
Atlas of Cancer Signalling NetworkUTP6
Wikipedia pathwaysUTP6
Orthology - Evolution
OrthoDB55813
GeneTree (enSembl)ENSG00000108651
Phylogenetic Trees/Animal Genes : TreeFamUTP6
Homologs : HomoloGeneUTP6
Homology/Alignments : Family Browser (UCSC)UTP6
Gene fusions - Rearrangements
Fusion : MitelmanSUPT6H/UTP6 [17q11.2/17q11.2]  
Fusion Cancer (Beijing)MDM4 [1q32.1]  -  UTP6 [17q11.2]  [FUSC000366]
Fusion : QuiverUTP6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP6
dbVarUTP6
ClinVarUTP6
MonarchUTP6
1000_GenomesUTP6 
Exome Variant ServerUTP6
GNOMAD BrowserENSG00000108651
Varsome BrowserUTP6
ACMGUTP6 variants
VarityQ9NYH9
Genomic Variants (DGV)UTP6 [DGVbeta]
DECIPHERUTP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTP6 
Mutations
ICGC Data PortalUTP6 
TCGA Data PortalUTP6 
Broad Tumor PortalUTP6
OASIS PortalUTP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUTP6
Mutations and Diseases : HGMDUTP6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaUTP6
DgiDB (Drug Gene Interaction Database)UTP6
DoCM (Curated mutations)UTP6
CIViC (Clinical Interpretations of Variants in Cancer)UTP6
Cancer3DUTP6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUTP6
MedgenUTP6
Genetic Testing Registry UTP6
NextProtQ9NYH9 [Medical]
GENETestsUTP6
Target ValidationUTP6
Huge Navigator UTP6 [HugePedia]
ClinGenUTP6
Clinical trials, drugs, therapy
MyCancerGenomeUTP6
Protein Interactions : CTDUTP6
Pharm GKB GenePA142672224
PharosQ9NYH9
Clinical trialUTP6
Miscellaneous
canSAR (ICR)UTP6
HarmonizomeUTP6
DataMed IndexUTP6
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXUTP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:50 CEST 2021

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