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UTP6 (UTP6, small subunit processome component)

Identity

Alias_namesC17orf40
chromosome 17 open reading frame 40
UTP6, small subunit (SSU) processome component, homolog (yeast)
Alias_symbol (synonym)HCA66
Other alias
HGNC (Hugo) UTP6
LocusID (NCBI) 55813
Atlas_Id 40795
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 30190190 and ends at 30228729 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DCUN1D1 (3q26.33) / UTP6 (17q11.2)GLUD1 (10q23.2) / UTP6 (17q11.2)MDM4 (1q32.1) / UTP6 (17q11.2)
SUPT6H (17q11.2) / UTP6 (17q11.2)UTP6 (17q11.2) / CDC6 (17q21.2)UTP6 (17q11.2) / MIR205HG (1q32.2)
SUPT6H 17q11.2 / UTP6 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTP6   18279
Cards
Entrez_Gene (NCBI)UTP6  55813  UTP6, small subunit processome component
AliasesC17orf40; HCA66
GeneCards (Weizmann)UTP6
Ensembl hg19 (Hinxton)ENSG00000108651 [Gene_View]  chr17:30190190-30228729 [Contig_View]  UTP6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000108651 [Gene_View]  chr17:30190190-30228729 [Contig_View]  UTP6 [Vega]
ICGC DataPortalENSG00000108651
TCGA cBioPortalUTP6
AceView (NCBI)UTP6
Genatlas (Paris)UTP6
WikiGenes55813
SOURCE (Princeton)UTP6
Genetics Home Reference (NIH)UTP6
Genomic and cartography
GoldenPath hg19 (UCSC)UTP6  -     chr17:30190190-30228729 -  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UTP6  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblUTP6 - 17q11.2 [CytoView hg19]  UTP6 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIUTP6 [Mapview hg19]  UTP6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF116631 AF244135 AF334386 AJ272197 AK057202
RefSeq transcript (Entrez)NM_018428
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)UTP6
Cluster EST : UnigeneHs.589862 [ NCBI ]
CGAP (NCI)Hs.589862
Alternative Splicing GalleryENSG00000108651
Gene ExpressionUTP6 [ NCBI-GEO ]   UTP6 [ EBI - ARRAY_EXPRESS ]   UTP6 [ SEEK ]   UTP6 [ MEM ]
Gene Expression Viewer (FireBrowse)UTP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55813
GTEX Portal (Tissue expression)UTP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYH9
Splice isoforms : SwissVarQ9NYH9
PhosPhoSitePlusQ9NYH9
Domains : Interpro (EBI)HAT    TPR-like_helical_dom    U3_snoRNA_assoc-6   
Domain families : Pfam (Sanger)U3_assoc_6 (PF08640)   
Domain families : Pfam (NCBI)pfam08640   
Domain families : Smart (EMBL)HAT (SM00386)  
Conserved Domain (NCBI)UTP6
DMDM Disease mutations55813
Blocks (Seattle)UTP6
SuperfamilyQ9NYH9
Human Protein AtlasENSG00000108651
Peptide AtlasQ9NYH9
HPRD11020
IPIIPI00020128   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYH9
IntAct (EBI)Q9NYH9
FunCoupENSG00000108651
BioGRIDUTP6
STRING (EMBL)UTP6
ZODIACUTP6
Ontologies - Pathways
QuickGOQ9NYH9
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  nucleoplasm  nucleolus  rRNA processing  snoRNA binding  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  nucleoplasm  nucleolus  rRNA processing  snoRNA binding  small-subunit processome  Pwp2p-containing subcomplex of 90S preribosome  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkUTP6
Atlas of Cancer Signalling NetworkUTP6
Wikipedia pathwaysUTP6
Orthology - Evolution
OrthoDB55813
GeneTree (enSembl)ENSG00000108651
Phylogenetic Trees/Animal Genes : TreeFamUTP6
HOVERGENQ9NYH9
HOGENOMQ9NYH9
Homologs : HomoloGeneUTP6
Homology/Alignments : Family Browser (UCSC)UTP6
Gene fusions - Rearrangements
Fusion : MitelmanSUPT6H/UTP6 [17q11.2/17q11.2]  [t(17;17)(q11;q11)]  
Fusion: TCGASUPT6H 17q11.2 UTP6 17q11.2 BRCA
Fusion Cancer (Beijing)MDM4 [1q32.1]  -  UTP6 [17q11.2]  [FUSC000366]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTP6
dbVarUTP6
ClinVarUTP6
1000_GenomesUTP6 
Exome Variant ServerUTP6
ExAC (Exome Aggregation Consortium)UTP6 (select the gene name)
Genetic variants : HAPMAP55813
Genomic Variants (DGV)UTP6 [DGVbeta]
DECIPHER (Syndromes)17:30190190-30228729  ENSG00000108651
CONAN: Copy Number AnalysisUTP6 
Mutations
ICGC Data PortalUTP6 
TCGA Data PortalUTP6 
Broad Tumor PortalUTP6
OASIS PortalUTP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTP6
DgiDB (Drug Gene Interaction Database)UTP6
DoCM (Curated mutations)UTP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTP6 (select a term)
intoGenUTP6
Cancer3DUTP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenUTP6
Genetic Testing Registry UTP6
NextProtQ9NYH9 [Medical]
TSGene55813
GENETestsUTP6
Huge Navigator UTP6 [HugePedia]
snp3D : Map Gene to Disease55813
BioCentury BCIQUTP6
ClinGenUTP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55813
Chemical/Pharm GKB GenePA142672224
Clinical trialUTP6
Miscellaneous
canSAR (ICR)UTP6 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTP6
EVEXUTP6
GoPubMedUTP6
iHOPUTP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:37 CEST 2017

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