Atlas of Genetics and Cytogenetics in Oncology and Haematology


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UTY (ubiquitously transcribed tetratricopeptide repeat containing, Y-linked)

Identity

Alias_namesubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
ubiquitously transcribed tetratricopeptide repeat gene, Y-linked
Alias_symbol (synonym)KDM6AL
Other aliasKDM6C
UTY1
HGNC (Hugo) UTY
LocusID (NCBI) 7404
Atlas_Id 75577
Location Yq11.221  [Link to chromosome band Yq11]
Location_base_pair Starts at 13248379 and ends at 13480670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KDM2B (12q24.31) / UTY (Yq11.221)NOV (8q24.12) / UTY (Yq11.221)UTY (Yq11.221) / OTUD7A (15q13.3)
UTY (Yq11.221) / UTY (Yq11.221)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UTY   12638
Cards
Entrez_Gene (NCBI)UTY  7404  ubiquitously transcribed tetratricopeptide repeat containing, Y-linked
AliasesKDM6AL; KDM6C; UTY1
GeneCards (Weizmann)UTY
Ensembl hg19 (Hinxton)ENSG00000183878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183878 [Gene_View]  chrY:13248379-13480670 [Contig_View]  UTY [Vega]
ICGC DataPortalENSG00000183878
TCGA cBioPortalUTY
AceView (NCBI)UTY
Genatlas (Paris)UTY
WikiGenes7404
SOURCE (Princeton)UTY
Genetics Home Reference (NIH)UTY
Genomic and cartography
GoldenPath hg38 (UCSC)UTY  -     chrY:13248379-13480670 -  Yq11.221   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UTY  -     Yq11.221   [Description]    (hg19-Feb_2009)
EnsemblUTY - Yq11.221 [CytoView hg19]  UTY - Yq11.221 [CytoView hg38]
Mapping of homologs : NCBIUTY [Mapview hg19]  UTY [Mapview hg38]
OMIM400009   
Gene and transcription
Genbank (Entrez)AF000994 AF000995 AF000996 AK292858 AK308952
RefSeq transcript (Entrez)NM_001258249 NM_001258250 NM_001258251 NM_001258252 NM_001258253 NM_001258254 NM_001258255 NM_001258256 NM_001258257 NM_001258258 NM_001258259 NM_001258260 NM_001258261 NM_001258262 NM_001258263 NM_001258264 NM_001258265 NM_001258266 NM_001258267 NM_001258268 NM_001258269 NM_001258270 NM_007125 NM_182659 NM_182660
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UTY
Cluster EST : UnigeneHs.115277 [ NCBI ]
CGAP (NCI)Hs.115277
Alternative Splicing GalleryENSG00000183878
Gene ExpressionUTY [ NCBI-GEO ]   UTY [ EBI - ARRAY_EXPRESS ]   UTY [ SEEK ]   UTY [ MEM ]
Gene Expression Viewer (FireBrowse)UTY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7404
GTEX Portal (Tissue expression)UTY
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14607   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14607  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14607
Splice isoforms : SwissVarO14607
Catalytic activity : Enzyme1.14.11.- [ Enzyme-Expasy ]   1.14.11.-1.14.11.- [ IntEnz-EBI ]   1.14.11.- [ BRENDA ]   1.14.11.- [ KEGG ]   
PhosPhoSitePlusO14607
Domaine pattern : Prosite (Expaxy)JMJC (PS51184)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)JmjC_dom    KDM6C    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)JmjC (PF02373)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam02373    pfam13181   
Domain families : Smart (EMBL)JmjC (SM00558)  TPR (SM00028)  
Conserved Domain (NCBI)UTY
DMDM Disease mutations7404
Blocks (Seattle)UTY
PDB (SRS)3ZLI    3ZPO    4UF0    5A1L    5FXV    5FXW    5FXX    5FXZ    5FY0    5FY1    5FY7    5FYM   
PDB (PDBSum)3ZLI    3ZPO    4UF0    5A1L    5FXV    5FXW    5FXX    5FXZ    5FY0    5FY1    5FY7    5FYM   
PDB (IMB)3ZLI    3ZPO    4UF0    5A1L    5FXV    5FXW    5FXX    5FXZ    5FY0    5FY1    5FY7    5FYM   
PDB (RSDB)3ZLI    3ZPO    4UF0    5A1L    5FXV    5FXW    5FXX    5FXZ    5FY0    5FY1    5FY7    5FYM   
Structural Biology KnowledgeBase3ZLI    3ZPO    4UF0    5A1L    5FXV    5FXW    5FXX    5FXZ    5FY0    5FY1    5FY7    5FYM   
SCOP (Structural Classification of Proteins)3ZLI    3ZPO    4UF0    5A1L    5FXV    5FXW    5FXX    5FXZ    5FY0    5FY1    5FY7    5FYM   
CATH (Classification of proteins structures)3ZLI    3ZPO    4UF0    5A1L    5FXV    5FXW    5FXX    5FXZ    5FY0    5FY1    5FY7    5FYM   
SuperfamilyO14607
Human Protein AtlasENSG00000183878
Peptide AtlasO14607
HPRD02451
IPIIPI00377009   IPI00023013   IPI00218824   IPI00973341   IPI00973329   IPI00973001   IPI00973300   IPI01015432   IPI00450954   
Protein Interaction databases
DIP (DOE-UCLA)O14607
IntAct (EBI)O14607
FunCoupENSG00000183878
BioGRIDUTY
STRING (EMBL)UTY
ZODIACUTY
Ontologies - Pathways
QuickGOO14607
Ontology : AmiGOnucleoplasm  regulation of gene expression  histone demethylase activity  metal ion binding  dioxygenase activity  oxidation-reduction process  histone H3-K27 demethylation  histone demethylase activity (H3-K27 specific)  
Ontology : EGO-EBInucleoplasm  regulation of gene expression  histone demethylase activity  metal ion binding  dioxygenase activity  oxidation-reduction process  histone H3-K27 demethylation  histone demethylase activity (H3-K27 specific)  
Pathways : KEGGTranscriptional misregulation in cancer   
NDEx NetworkUTY
Atlas of Cancer Signalling NetworkUTY
Wikipedia pathwaysUTY
Orthology - Evolution
OrthoDB7404
GeneTree (enSembl)ENSG00000183878
Phylogenetic Trees/Animal Genes : TreeFamUTY
HOVERGENO14607
HOGENOMO14607
Homologs : HomoloGeneUTY
Homology/Alignments : Family Browser (UCSC)UTY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUTY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UTY
dbVarUTY
ClinVarUTY
1000_GenomesUTY 
Exome Variant ServerUTY
ExAC (Exome Aggregation Consortium)UTY (select the gene name)
Genetic variants : HAPMAP7404
Genomic Variants (DGV)UTY [DGVbeta]
DECIPHERUTY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUTY 
Mutations
ICGC Data PortalUTY 
TCGA Data PortalUTY 
Broad Tumor PortalUTY
OASIS PortalUTY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUTY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDUTY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UTY
DgiDB (Drug Gene Interaction Database)UTY
DoCM (Curated mutations)UTY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UTY (select a term)
intoGenUTY
Cancer3DUTY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400009   
Orphanet
MedgenUTY
Genetic Testing Registry UTY
NextProtO14607 [Medical]
TSGene7404
GENETestsUTY
Target ValidationUTY
Huge Navigator UTY [HugePedia]
snp3D : Map Gene to Disease7404
BioCentury BCIQUTY
ClinGenUTY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7404
Chemical/Pharm GKB GenePA37263
Clinical trialUTY
Miscellaneous
canSAR (ICR)UTY (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUTY
EVEXUTY
GoPubMedUTY
iHOPUTY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:43:29 CEST 2017

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