Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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UVSSA (UV-stimulated scaffold protein A)

Identity

Other namesKIAA1530
UVSS3
HGNC (Hugo) UVSSA
LocusID (NCBI) 57654
Location 4p16.3
Location_base_pair Starts at 1341104 and ends at 1381837 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)UVSSA   29304
Cards
Entrez_Gene (NCBI)UVSSA  57654  UV-stimulated scaffold protein A
GeneCards (Weizmann)UVSSA
Ensembl hg19 (Hinxton)ENSG00000163945 [Gene_View]  chr4:1341104-1381837 [Contig_View]  UVSSA [Vega]
Ensembl hg38 (Hinxton)ENSG00000163945 [Gene_View]  chr4:1341104-1381837 [Contig_View]  UVSSA [Vega]
ICGC DataPortalENSG00000163945
cBioPortalUVSSA
AceView (NCBI)UVSSA
Genatlas (Paris)UVSSA
WikiGenes57654
SOURCE (Princeton)UVSSA
Genomic and cartography
GoldenPath hg19 (UCSC)UVSSA  -     chr4:1341104-1381837 +  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UVSSA  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblUVSSA - 4p16.3 [CytoView hg19]  UVSSA - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIUVSSA [Mapview hg19]  UVSSA [Mapview hg38]
OMIM614632   614640   
Gene and transcription
Genbank (Entrez)AB040963 AK292661 AL110229 AL390128 BC021930
RefSeq transcript (Entrez)NM_020894
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_032753 NT_006051 NW_004929313
Consensus coding sequences : CCDS (NCBI)UVSSA
Cluster EST : UnigeneHs.380475 [ NCBI ]
CGAP (NCI)Hs.380475
Alternative Splicing : Fast-db (Paris)GSHG0022402
Alternative Splicing GalleryENSG00000163945
Gene ExpressionUVSSA [ NCBI-GEO ]     UVSSA [ SEEK ]   UVSSA [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2YD98 (Uniprot)
NextProtQ2YD98  [Medical]
With graphics : InterProQ2YD98
Splice isoforms : SwissVarQ2YD98 (Swissvar)
Domains : Interpro (EBI)DUF2043   
Related proteins : CluSTrQ2YD98
Domain families : Pfam (Sanger)DUF2043 (PF09740)   
Domain families : Pfam (NCBI)pfam09740   
DMDM Disease mutations57654
Blocks (Seattle)Q2YD98
Human Protein AtlasENSG00000163945
Peptide AtlasQ2YD98
HPRD17216
IPIIPI00001849   IPI00885147   IPI00783032   
Protein Interaction databases
DIP (DOE-UCLA)Q2YD98
IntAct (EBI)Q2YD98
FunCoupENSG00000163945
BioGRIDUVSSA
IntegromeDBUVSSA
STRING (EMBL)UVSSA
Ontologies - Pathways
QuickGOQ2YD98
Ontology : AmiGORNA polymerase II core binding  RNA polymerase II core binding  protein binding  chromosome  transcription-coupled nucleotide-excision repair  response to UV  protein ubiquitination  
Ontology : EGO-EBIRNA polymerase II core binding  RNA polymerase II core binding  protein binding  chromosome  transcription-coupled nucleotide-excision repair  response to UV  protein ubiquitination  
Protein Interaction DatabaseUVSSA
DoCM (Curated mutations)UVSSA
Wikipedia pathwaysUVSSA
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerUVSSA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UVSSA
dbVarUVSSA
ClinVarUVSSA
1000_GenomesUVSSA 
Exome Variant ServerUVSSA
SNP (GeneSNP Utah)UVSSA
SNP : HGBaseUVSSA
Genetic variants : HAPMAPUVSSA
Genomic Variants (DGV)UVSSA [DGVbeta]
Mutations
ICGC Data PortalENSG00000163945 
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:1341104-1381837
Mutations and Diseases : HGMDUVSSA
OMIM614632    614640   
MedgenUVSSA
NextProtQ2YD98 [Medical]
GENETestsUVSSA
Disease Genetic AssociationUVSSA
Huge Navigator UVSSA [HugePedia]  UVSSA [HugeCancerGEM]
snp3D : Map Gene to Disease57654
DGIdb (Drug Gene Interaction db)UVSSA
General knowledge
Homologs : HomoloGeneUVSSA
Homology/Alignments : Family Browser (UCSC)UVSSA
Phylogenetic Trees/Animal Genes : TreeFamUVSSA
Chemical/Protein Interactions : CTD57654
Chemical/Pharm GKB GenePA162393105
Clinical trialUVSSA
Cancer Resource (Charite)ENSG00000163945
Other databases
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
CoreMineUVSSA
GoPubMedUVSSA
iHOPUVSSA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:48:10 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.