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UVSSA (UV stimulated scaffold protein A)

Identity

Other namesKIAA1530
UVSS3
HGNC (Hugo) UVSSA
LocusID (NCBI) 57654
Atlas_Id 52742
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 1341054 and ends at 1381837 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UVSSA (4p16.3) / CRIPAK (4p16.3)UVSSA (4p16.3) / MAEA (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UVSSA   29304
Cards
Entrez_Gene (NCBI)UVSSA  57654  UV stimulated scaffold protein A
AliasesKIAA1530; UVSS3
GeneCards (Weizmann)UVSSA
Ensembl hg19 (Hinxton)ENSG00000163945 [Gene_View]  chr4:1341054-1381837 [Contig_View]  UVSSA [Vega]
Ensembl hg38 (Hinxton)ENSG00000163945 [Gene_View]  chr4:1341054-1381837 [Contig_View]  UVSSA [Vega]
ICGC DataPortalENSG00000163945
TCGA cBioPortalUVSSA
AceView (NCBI)UVSSA
Genatlas (Paris)UVSSA
WikiGenes57654
SOURCE (Princeton)UVSSA
Genomic and cartography
GoldenPath hg19 (UCSC)UVSSA  -     chr4:1341054-1381837 +  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)UVSSA  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblUVSSA - 4p16.3 [CytoView hg19]  UVSSA - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIUVSSA [Mapview hg19]  UVSSA [Mapview hg38]
OMIM614632   614640   
Gene and transcription
Genbank (Entrez)AB040963 AK292661 AL110229 AL390128 AL512751
RefSeq transcript (Entrez)NM_001317934 NM_001317935 NM_020894
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_032753 NT_006051 NW_004929313
Consensus coding sequences : CCDS (NCBI)UVSSA
Cluster EST : UnigeneHs.744620 [ NCBI ]
CGAP (NCI)Hs.744620
Alternative Splicing GalleryENSG00000163945
Gene ExpressionUVSSA [ NCBI-GEO ]   UVSSA [ EBI - ARRAY_EXPRESS ]   UVSSA [ SEEK ]   UVSSA [ MEM ]
Gene Expression Viewer (FireBrowse)UVSSA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57654
GTEX Portal (Tissue expression)UVSSA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2YD98 (Uniprot)
NextProtQ2YD98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2YD98
Splice isoforms : SwissVarQ2YD98 (Swissvar)
PhosPhoSitePlusQ2YD98
Domains : Interpro (EBI)DUF2043   
Domain families : Pfam (Sanger)DUF2043 (PF09740)   
Domain families : Pfam (NCBI)pfam09740   
DMDM Disease mutations57654
Blocks (Seattle)UVSSA
SuperfamilyQ2YD98
Human Protein AtlasENSG00000163945
Peptide AtlasQ2YD98
HPRD17216
IPIIPI00001849   IPI00885147   IPI00783032   
Protein Interaction databases
DIP (DOE-UCLA)Q2YD98
IntAct (EBI)Q2YD98
FunCoupENSG00000163945
BioGRIDUVSSA
STRING (EMBL)UVSSA
ZODIACUVSSA
Ontologies - Pathways
QuickGOQ2YD98
Ontology : AmiGORNA polymerase II core binding  RNA polymerase II core binding  protein binding  nucleoplasm  chromosome  transcription-coupled nucleotide-excision repair  transcription-coupled nucleotide-excision repair  response to UV  protein ubiquitination  
Ontology : EGO-EBIRNA polymerase II core binding  RNA polymerase II core binding  protein binding  nucleoplasm  chromosome  transcription-coupled nucleotide-excision repair  transcription-coupled nucleotide-excision repair  response to UV  protein ubiquitination  
NDEx Network
Atlas of Cancer Signalling NetworkUVSSA
Wikipedia pathwaysUVSSA
Orthology - Evolution
OrthoDB57654
GeneTree (enSembl)ENSG00000163945
Phylogenetic Trees/Animal Genes : TreeFamUVSSA
Homologs : HomoloGeneUVSSA
Homology/Alignments : Family Browser (UCSC)UVSSA
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerUVSSA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UVSSA
dbVarUVSSA
ClinVarUVSSA
1000_GenomesUVSSA 
Exome Variant ServerUVSSA
ExAC (Exome Aggregation Consortium)UVSSA (select the gene name)
Genetic variants : HAPMAP57654
Genomic Variants (DGV)UVSSA [DGVbeta]
Mutations
ICGC Data PortalUVSSA 
TCGA Data PortalUVSSA 
Broad Tumor PortalUVSSA
OASIS PortalUVSSA [ Somatic mutations - Copy number]
BioMutasearch UVSSA
DgiDB (Drug Gene Interaction Database)UVSSA
DoCM (Curated mutations)UVSSA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UVSSA (select a term)
intoGenUVSSA
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)4:1341054-1381837  ENSG00000163945
CONAN: Copy Number AnalysisUVSSA 
Mutations and Diseases : HGMDUVSSA
OMIM614632    614640   
MedgenUVSSA
Genetic Testing Registry UVSSA
NextProtQ2YD98 [Medical]
TSGene57654
GENETestsUVSSA
Huge Navigator UVSSA [HugePedia]
snp3D : Map Gene to Disease57654
BioCentury BCIQUVSSA
ClinGenUVSSA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57654
Chemical/Pharm GKB GenePA162393105
Clinical trialUVSSA
Miscellaneous
canSAR (ICR)UVSSA (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUVSSA
EVEXUVSSA
GoPubMedUVSSA
iHOPUVSSA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:25:53 CEST 2016

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