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VAC14 (Vac14 homolog (S. cerevisiae))

Identity

Other namesArPIKfyve
TAX1BP2
TRX
HGNC (Hugo) VAC14
LocusID (NCBI) 55697
Location 16q22.1
Location_base_pair Starts at 70721342 and ends at 70835061 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VAC14   25507
Cards
Entrez_Gene (NCBI)VAC14  55697  Vac14 homolog (S. cerevisiae)
GeneCards (Weizmann)VAC14
Ensembl (Hinxton)ENSG00000103043 [Gene_View]  chr16:70721342-70835061 [Contig_View]  VAC14 [Vega]
ICGC DataPortalENSG00000103043
cBioPortalVAC14
AceView (NCBI)VAC14
Genatlas (Paris)VAC14
WikiGenes55697
SOURCE (Princeton)NM_018052
Genomic and cartography
GoldenPath (UCSC)VAC14  -  16q22.1   chr16:70721342-70835061 -  16q22.1   [Description]    (hg19-Feb_2009)
EnsemblVAC14 - 16q22.1 [CytoView]
Mapping of homologs : NCBIVAC14 [Mapview]
OMIM604632   
Gene and transcription
Genbank (Entrez)AK001167 AK025479 AK056433 AK090627 AK093941
RefSeq transcript (Entrez)NM_018052
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010498 NW_001838295 NW_004929402
Consensus coding sequences : CCDS (NCBI)VAC14
Cluster EST : UnigeneHs.445061 [ NCBI ]
CGAP (NCI)Hs.445061
Alternative Splicing : Fast-db (Paris)GSHG0011955
Alternative Splicing GalleryENSG00000103043
Gene ExpressionVAC14 [ NCBI-GEO ]     VAC14 [ SEEK ]   VAC14 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08AM6 (Uniprot)
NextProtQ08AM6  [Medical]
With graphics : InterProQ08AM6
Splice isoforms : SwissVarQ08AM6 (Swissvar)
Domaine pattern : Prosite (Expaxy)HEAT_REPEAT (PS50077)   
Domains : Interpro (EBI)ARM-like [organisation]   ARM-type_fold [organisation]   VAC14 [organisation]   VAC14_Fig4p-bd [organisation]  
Related proteins : CluSTrQ08AM6
Domain families : Pfam (Sanger)Vac14_Fig4_bd (PF11916)   
Domain families : Pfam (NCBI)pfam11916   
DMDM Disease mutations55697
Blocks (Seattle)Q08AM6
Human Protein AtlasENSG00000103043 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ08AM6
HPRD07660
IPIIPI00025160   IPI00642338   
Protein Interaction databases
DIP (DOE-UCLA)Q08AM6
IntAct (EBI)Q08AM6
FunCoupENSG00000103043
BioGRIDVAC14
InParanoidQ08AM6
Interologous Interaction database Q08AM6
IntegromeDBVAC14
STRING (EMBL)VAC14
Ontologies - Pathways
Ontology : AmiGOGolgi membrane  receptor activity  protein binding  endoplasmic reticulum  phospholipid metabolic process  phosphatidylinositol biosynthetic process  signal transduction  endosome membrane  modulation by virus of host morphology or physiology  kinase activator activity  early endosome membrane  late endosome membrane  small molecule metabolic process  
Ontology : EGO-EBIGolgi membrane  receptor activity  protein binding  endoplasmic reticulum  phospholipid metabolic process  phosphatidylinositol biosynthetic process  signal transduction  endosome membrane  modulation by virus of host morphology or physiology  kinase activator activity  early endosome membrane  late endosome membrane  small molecule metabolic process  
Pathways : KEGGHTLV-I infection    Viral carcinogenesis   
Protein Interaction DatabaseVAC14
Wikipedia pathwaysVAC14
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)VAC14
snp3D : Map Gene to Disease55697
SNP (GeneSNP Utah)VAC14
SNP : HGBaseVAC14
Genetic variants : HAPMAPVAC14
Exome VariantVAC14
1000_GenomesVAC14 
ICGC programENSG00000103043 
Somatic Mutations in Cancer : COSMICVAC14 
CONAN: Copy Number AnalysisVAC14 
Mutations and Diseases : HGMDVAC14
Genomic VariantsVAC14  VAC14 [DGVbeta]
dbVarVAC14
ClinVarVAC14
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604632   
MedgenVAC14
GENETestsVAC14
Disease Genetic AssociationVAC14
Huge Navigator VAC14 [HugePedia]  VAC14 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneVAC14
Homology/Alignments : Family Browser (UCSC)VAC14
Phylogenetic Trees/Animal Genes : TreeFamVAC14
Chemical/Protein Interactions : CTD55697
Chemical/Pharm GKB GenePA142670633
Clinical trialVAC14
Cancer Resource (Charite)ENSG00000103043
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
CoreMineVAC14
iHOPVAC14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:25:30 CEST 2014

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