Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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VAC14 (Vac14 homolog (S. cerevisiae))

Identity

Other namesArPIKfyve
TAX1BP2
TRX
HGNC (Hugo) VAC14
LocusID (NCBI) 55697
Location 16q22.1
Location_base_pair Starts at 70721342 and ends at 70835061 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VAC14   25507
Cards
Entrez_Gene (NCBI)VAC14  55697  Vac14 homolog (S. cerevisiae)
GeneCards (Weizmann)VAC14
Ensembl hg19 (Hinxton)ENSG00000103043 [Gene_View]  chr16:70721342-70835061 [Contig_View]  VAC14 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103043 [Gene_View]  chr16:70721342-70835061 [Contig_View]  VAC14 [Vega]
ICGC DataPortalENSG00000103043
cBioPortalVAC14
AceView (NCBI)VAC14
Genatlas (Paris)VAC14
WikiGenes55697
SOURCE (Princeton)VAC14
Genomic and cartography
GoldenPath hg19 (UCSC)VAC14  -     chr16:70721342-70835061 -  16q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VAC14  -     16q22.1   [Description]    (hg38-Dec_2013)
EnsemblVAC14 - 16q22.1 [CytoView hg19]  VAC14 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIVAC14 [Mapview hg19]  VAC14 [Mapview hg38]
OMIM604632   
Gene and transcription
Genbank (Entrez)AK001167 AK025479 AK056433 AK090627 AK093941
RefSeq transcript (Entrez)NM_018052
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)VAC14
Cluster EST : UnigeneHs.445061 [ NCBI ]
CGAP (NCI)Hs.445061
Alternative Splicing : Fast-db (Paris)GSHG0011955
Alternative Splicing GalleryENSG00000103043
Gene ExpressionVAC14 [ NCBI-GEO ]     VAC14 [ SEEK ]   VAC14 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08AM6 (Uniprot)
NextProtQ08AM6  [Medical]
With graphics : InterProQ08AM6
Splice isoforms : SwissVarQ08AM6 (Swissvar)
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Vac14    VAC14_Fig4p-bd   
Related proteins : CluSTrQ08AM6
Domain families : Pfam (Sanger)Vac14_Fig4_bd (PF11916)   
Domain families : Pfam (NCBI)pfam11916   
DMDM Disease mutations55697
Blocks (Seattle)Q08AM6
Human Protein AtlasENSG00000103043
Peptide AtlasQ08AM6
HPRD07660
IPIIPI00025160   IPI00642338   
Protein Interaction databases
DIP (DOE-UCLA)Q08AM6
IntAct (EBI)Q08AM6
FunCoupENSG00000103043
BioGRIDVAC14
IntegromeDBVAC14
STRING (EMBL)VAC14
Ontologies - Pathways
QuickGOQ08AM6
Ontology : AmiGOGolgi membrane  receptor activity  protein binding  endoplasmic reticulum  phospholipid metabolic process  phosphatidylinositol biosynthetic process  signal transduction  endosome membrane  viral process  early endosome membrane  late endosome membrane  regulation of lipid kinase activity  small molecule metabolic process  PAS complex  
Ontology : EGO-EBIGolgi membrane  receptor activity  protein binding  endoplasmic reticulum  phospholipid metabolic process  phosphatidylinositol biosynthetic process  signal transduction  endosome membrane  viral process  early endosome membrane  late endosome membrane  regulation of lipid kinase activity  small molecule metabolic process  PAS complex  
Pathways : KEGGHTLV-I infection    Viral carcinogenesis   
Protein Interaction DatabaseVAC14
DoCM (Curated mutations)VAC14
Wikipedia pathwaysVAC14
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerVAC14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAC14
dbVarVAC14
ClinVarVAC14
1000_GenomesVAC14 
Exome Variant ServerVAC14
SNP (GeneSNP Utah)VAC14
SNP : HGBaseVAC14
Genetic variants : HAPMAPVAC14
Genomic Variants (DGV)VAC14 [DGVbeta]
Mutations
ICGC Data PortalENSG00000103043 
Somatic Mutations in Cancer : COSMICVAC14 
CONAN: Copy Number AnalysisVAC14 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:70721342-70835061
Mutations and Diseases : HGMDVAC14
OMIM604632   
MedgenVAC14
NextProtQ08AM6 [Medical]
GENETestsVAC14
Disease Genetic AssociationVAC14
Huge Navigator VAC14 [HugePedia]  VAC14 [HugeCancerGEM]
snp3D : Map Gene to Disease55697
DGIdb (Drug Gene Interaction db)VAC14
General knowledge
Homologs : HomoloGeneVAC14
Homology/Alignments : Family Browser (UCSC)VAC14
Phylogenetic Trees/Animal Genes : TreeFamVAC14
Chemical/Protein Interactions : CTD55697
Chemical/Pharm GKB GenePA142670633
Clinical trialVAC14
Cancer Resource (Charite)ENSG00000103043
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
CoreMineVAC14
GoPubMedVAC14
iHOPVAC14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:48:12 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.