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VAMP1 (vesicle associated membrane protein 1)

Identity

Alias_namesSYB1
synaptobrevin 1
Alias_symbol (synonym)VAMP-1
Other aliasSPAX1
HGNC (Hugo) VAMP1
LocusID (NCBI) 6843
Atlas_Id 50566
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6462238 and ends at 6470899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VAMP1 (12p13.31) / CD27-AS1 (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VAMP1   12642
Cards
Entrez_Gene (NCBI)VAMP1  6843  vesicle associated membrane protein 1
AliasesSPAX1; SYB1; VAMP-1
GeneCards (Weizmann)VAMP1
Ensembl hg19 (Hinxton)ENSG00000139190 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139190 [Gene_View]  chr12:6462238-6470899 [Contig_View]  VAMP1 [Vega]
ICGC DataPortalENSG00000139190
TCGA cBioPortalVAMP1
AceView (NCBI)VAMP1
Genatlas (Paris)VAMP1
WikiGenes6843
SOURCE (Princeton)VAMP1
Genetics Home Reference (NIH)VAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)VAMP1  -     chr12:6462238-6470899 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VAMP1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblVAMP1 - 12p13.31 [CytoView hg19]  VAMP1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIVAMP1 [Mapview hg19]  VAMP1 [Mapview hg38]
OMIM108600   185880   
Gene and transcription
Genbank (Entrez)AF060538 AK289498 AK296294 AK303137 AK309184
RefSeq transcript (Entrez)NM_001297438 NM_014231 NM_016830 NM_199245
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VAMP1
Cluster EST : UnigeneHs.20021 [ NCBI ]
CGAP (NCI)Hs.20021
Alternative Splicing GalleryENSG00000139190
Gene ExpressionVAMP1 [ NCBI-GEO ]   VAMP1 [ EBI - ARRAY_EXPRESS ]   VAMP1 [ SEEK ]   VAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)VAMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6843
GTEX Portal (Tissue expression)VAMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23763   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23763  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23763
Splice isoforms : SwissVarP23763
PhosPhoSitePlusP23763
Domaine pattern : Prosite (Expaxy)SYNAPTOBREVIN (PS00417)    V_SNARE (PS50892)   
Domains : Interpro (EBI)Synaptobrevin    Synaptobrevin/VAMP   
Domain families : Pfam (Sanger)Synaptobrevin (PF00957)   
Domain families : Pfam (NCBI)pfam00957   
Conserved Domain (NCBI)VAMP1
DMDM Disease mutations6843
Blocks (Seattle)VAMP1
SuperfamilyP23763
Human Protein AtlasENSG00000139190
Peptide AtlasP23763
HPRD01716
IPIIPI00012898   IPI00332864   IPI00397527   IPI00790778   IPI00908700   IPI01014416   IPI01013495   
Protein Interaction databases
DIP (DOE-UCLA)P23763
IntAct (EBI)P23763
FunCoupENSG00000139190
BioGRIDVAMP1
STRING (EMBL)VAMP1
ZODIACVAMP1
Ontologies - Pathways
QuickGOP23763
Ontology : AmiGOSNAP receptor activity  protein binding  mitochondrial outer membrane  cytosol  cytosol  integral component of plasma membrane  exocytosis  vesicle fusion  cell surface  syntaxin binding  cell junction  synaptic vesicle membrane  SNARE complex  SNARE complex assembly  azurophil granule membrane  specific granule membrane  terminal bouton  tertiary granule membrane  
Ontology : EGO-EBISNAP receptor activity  protein binding  mitochondrial outer membrane  cytosol  cytosol  integral component of plasma membrane  exocytosis  vesicle fusion  cell surface  syntaxin binding  cell junction  synaptic vesicle membrane  SNARE complex  SNARE complex assembly  azurophil granule membrane  specific granule membrane  terminal bouton  tertiary granule membrane  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkVAMP1
Atlas of Cancer Signalling NetworkVAMP1
Wikipedia pathwaysVAMP1
Orthology - Evolution
OrthoDB6843
GeneTree (enSembl)ENSG00000139190
Phylogenetic Trees/Animal Genes : TreeFamVAMP1
HOVERGENP23763
HOGENOMP23763
Homologs : HomoloGeneVAMP1
Homology/Alignments : Family Browser (UCSC)VAMP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVAMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAMP1
dbVarVAMP1
ClinVarVAMP1
1000_GenomesVAMP1 
Exome Variant ServerVAMP1
ExAC (Exome Aggregation Consortium)VAMP1 (select the gene name)
Genetic variants : HAPMAP6843
Genomic Variants (DGV)VAMP1 [DGVbeta]
DECIPHERVAMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVAMP1 
Mutations
ICGC Data PortalVAMP1 
TCGA Data PortalVAMP1 
Broad Tumor PortalVAMP1
OASIS PortalVAMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVAMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVAMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch VAMP1
DgiDB (Drug Gene Interaction Database)VAMP1
DoCM (Curated mutations)VAMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VAMP1 (select a term)
intoGenVAMP1
Cancer3DVAMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM108600    185880   
Orphanet19620   
MedgenVAMP1
Genetic Testing Registry VAMP1
NextProtP23763 [Medical]
TSGene6843
GENETestsVAMP1
Huge Navigator VAMP1 [HugePedia]
snp3D : Map Gene to Disease6843
BioCentury BCIQVAMP1
ClinGenVAMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6843
Chemical/Pharm GKB GenePA37266
Clinical trialVAMP1
Miscellaneous
canSAR (ICR)VAMP1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVAMP1
EVEXVAMP1
GoPubMedVAMP1
iHOPVAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:43:41 CEST 2017

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