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VAMP5 (vesicle associated membrane protein 5)

Identity

Alias (NCBI)-
HGNC (Hugo) VAMP5
HGNC Alias namemyobrevin
LocusID (NCBI) 10791
Atlas_Id 56140
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85584431 and ends at 85593406 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLXDC2 (10p12.31) / VAMP5 (2p11.2)VAMP8 (2p11.2) / VAMP5 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)VAMP5   12646
Cards
Entrez_Gene (NCBI)VAMP5    vesicle associated membrane protein 5
Aliases
GeneCards (Weizmann)VAMP5
Ensembl hg19 (Hinxton)ENSG00000168899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168899 [Gene_View]  ENSG00000168899 [Sequence]  chr2:85584431-85593406 [Contig_View]  VAMP5 [Vega]
ICGC DataPortalENSG00000168899
TCGA cBioPortalVAMP5
AceView (NCBI)VAMP5
Genatlas (Paris)VAMP5
SOURCE (Princeton)VAMP5
Genetics Home Reference (NIH)VAMP5
Genomic and cartography
GoldenPath hg38 (UCSC)VAMP5  -     chr2:85584431-85593406 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VAMP5  -     2p11.2   [Description]    (hg19-Feb_2009)
GoldenPathVAMP5 - 2p11.2 [CytoView hg19]  VAMP5 - 2p11.2 [CytoView hg38]
ImmunoBaseENSG00000168899
Genome Data Viewer NCBIVAMP5 [Mapview hg19]  
OMIM607029   
Gene and transcription
Genbank (Entrez)AF054825 AF077197 AF151025 AK292660 BC017891
RefSeq transcript (Entrez)NM_006634
Consensus coding sequences : CCDS (NCBI)VAMP5
Gene ExpressionVAMP5 [ NCBI-GEO ]   VAMP5 [ EBI - ARRAY_EXPRESS ]   VAMP5 [ SEEK ]   VAMP5 [ MEM ]
Gene Expression Viewer (FireBrowse)VAMP5 [ Firebrowse - Broad ]
GenevisibleExpression of VAMP5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10791
GTEX Portal (Tissue expression)VAMP5
Human Protein AtlasENSG00000168899-VAMP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95183   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95183  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95183
PhosPhoSitePlusO95183
Domaine pattern : Prosite (Expaxy)SYNAPTOBREVIN (PS00417)    V_SNARE (PS50892)   
Domains : Interpro (EBI)Synaptobrevin    V_SNARE_CC    Vamp5    VAMP5_R-SNARE   
Domain families : Pfam (Sanger)Synaptobrevin (PF00957)   
Domain families : Pfam (NCBI)pfam00957   
Conserved Domain (NCBI)VAMP5
SuperfamilyO95183
AlphaFold pdb e-kbO95183   
Human Protein Atlas [tissue]ENSG00000168899-VAMP5 [tissue]
HPRD09513
Protein Interaction databases
DIP (DOE-UCLA)O95183
IntAct (EBI)O95183
BioGRIDVAMP5
STRING (EMBL)VAMP5
ZODIACVAMP5
Ontologies - Pathways
QuickGOO95183
Ontology : AmiGOprotein binding  late endosome  Golgi apparatus  plasma membrane  integral component of plasma membrane  muscle organ development  skeletal muscle tissue development  cell surface  intercalated disc  cell differentiation  cytoplasmic vesicle membrane  integral component of organelle membrane  Golgi to plasma membrane protein transport  perinuclear region of cytoplasm  extracellular exosome  
Ontology : EGO-EBIprotein binding  late endosome  Golgi apparatus  plasma membrane  integral component of plasma membrane  muscle organ development  skeletal muscle tissue development  cell surface  intercalated disc  cell differentiation  cytoplasmic vesicle membrane  integral component of organelle membrane  Golgi to plasma membrane protein transport  perinuclear region of cytoplasm  extracellular exosome  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkVAMP5
Atlas of Cancer Signalling NetworkVAMP5
Wikipedia pathwaysVAMP5
Orthology - Evolution
OrthoDB10791
GeneTree (enSembl)ENSG00000168899
Phylogenetic Trees/Animal Genes : TreeFamVAMP5
Homologs : HomoloGeneVAMP5
Homology/Alignments : Family Browser (UCSC)VAMP5
Gene fusions - Rearrangements
Fusion : QuiverVAMP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVAMP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAMP5
dbVarVAMP5
ClinVarVAMP5
MonarchVAMP5
1000_GenomesVAMP5 
Exome Variant ServerVAMP5
GNOMAD BrowserENSG00000168899
Varsome BrowserVAMP5
ACMGVAMP5 variants
VarityO95183
Genomic Variants (DGV)VAMP5 [DGVbeta]
DECIPHERVAMP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVAMP5 
Mutations
ICGC Data PortalVAMP5 
TCGA Data PortalVAMP5 
Broad Tumor PortalVAMP5
OASIS PortalVAMP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVAMP5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVAMP5
Mutations and Diseases : HGMDVAMP5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVAMP5
DgiDB (Drug Gene Interaction Database)VAMP5
DoCM (Curated mutations)VAMP5
CIViC (Clinical Interpretations of Variants in Cancer)VAMP5
Cancer3DVAMP5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607029   
Orphanet
DisGeNETVAMP5
MedgenVAMP5
Genetic Testing Registry VAMP5
NextProtO95183 [Medical]
GENETestsVAMP5
Target ValidationVAMP5
Huge Navigator VAMP5 [HugePedia]
ClinGenVAMP5
Clinical trials, drugs, therapy
MyCancerGenomeVAMP5
Protein Interactions : CTDVAMP5
Pharm GKB GenePA37270
Pharm GKB PathwaysPA162355621   
PharosO95183
Clinical trialVAMP5
Miscellaneous
canSAR (ICR)VAMP5
HarmonizomeVAMP5
DataMed IndexVAMP5
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVAMP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:53 CEST 2021

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