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VAMP5 (vesicle associated membrane protein 5)

Identity

Other alias-
HGNC (Hugo) VAMP5
LocusID (NCBI) 10791
Atlas_Id 56140
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85584408 and ends at 85593388 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLXDC2 (10p12.31) / VAMP5 (2p11.2)VAMP8 (2p11.2) / VAMP5 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VAMP5   12646
Cards
Entrez_Gene (NCBI)VAMP5  10791  vesicle associated membrane protein 5
Aliases
GeneCards (Weizmann)VAMP5
Ensembl hg19 (Hinxton)ENSG00000168899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168899 [Gene_View]  chr2:85584408-85593388 [Contig_View]  VAMP5 [Vega]
ICGC DataPortalENSG00000168899
TCGA cBioPortalVAMP5
AceView (NCBI)VAMP5
Genatlas (Paris)VAMP5
WikiGenes10791
SOURCE (Princeton)VAMP5
Genetics Home Reference (NIH)VAMP5
Genomic and cartography
GoldenPath hg38 (UCSC)VAMP5  -     chr2:85584408-85593388 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VAMP5  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblVAMP5 - 2p11.2 [CytoView hg19]  VAMP5 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIVAMP5 [Mapview hg19]  VAMP5 [Mapview hg38]
OMIM607029   
Gene and transcription
Genbank (Entrez)AF054825 AF077197 AF151025 AK292660 BC017891
RefSeq transcript (Entrez)NM_006634
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VAMP5
Cluster EST : UnigeneHs.534373 [ NCBI ]
CGAP (NCI)Hs.534373
Alternative Splicing GalleryENSG00000168899
Gene ExpressionVAMP5 [ NCBI-GEO ]   VAMP5 [ EBI - ARRAY_EXPRESS ]   VAMP5 [ SEEK ]   VAMP5 [ MEM ]
Gene Expression Viewer (FireBrowse)VAMP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10791
GTEX Portal (Tissue expression)VAMP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95183   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95183  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95183
Splice isoforms : SwissVarO95183
PhosPhoSitePlusO95183
Domaine pattern : Prosite (Expaxy)SYNAPTOBREVIN (PS00417)    V_SNARE (PS50892)   
Domains : Interpro (EBI)Synaptobrevin   
Domain families : Pfam (Sanger)Synaptobrevin (PF00957)   
Domain families : Pfam (NCBI)pfam00957   
Conserved Domain (NCBI)VAMP5
DMDM Disease mutations10791
Blocks (Seattle)VAMP5
SuperfamilyO95183
Human Protein AtlasENSG00000168899
Peptide AtlasO95183
HPRD09513
IPIIPI00293756   
Protein Interaction databases
DIP (DOE-UCLA)O95183
IntAct (EBI)O95183
FunCoupENSG00000168899
BioGRIDVAMP5
STRING (EMBL)VAMP5
ZODIACVAMP5
Ontologies - Pathways
QuickGOO95183
Ontology : AmiGOSNARE binding  SNAP receptor activity  protein binding  late endosome  Golgi apparatus  plasma membrane  integral component of plasma membrane  exocytosis  vesicle fusion  muscle organ development  skeletal muscle tissue development  cell surface  intercalated disc  cell differentiation  cytoplasmic vesicle membrane  SNARE complex  integral component of organelle membrane  Golgi to plasma membrane protein transport  perinuclear region of cytoplasm  extracellular exosome  
Ontology : EGO-EBISNARE binding  SNAP receptor activity  protein binding  late endosome  Golgi apparatus  plasma membrane  integral component of plasma membrane  exocytosis  vesicle fusion  muscle organ development  skeletal muscle tissue development  cell surface  intercalated disc  cell differentiation  cytoplasmic vesicle membrane  SNARE complex  integral component of organelle membrane  Golgi to plasma membrane protein transport  perinuclear region of cytoplasm  extracellular exosome  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkVAMP5
Atlas of Cancer Signalling NetworkVAMP5
Wikipedia pathwaysVAMP5
Orthology - Evolution
OrthoDB10791
GeneTree (enSembl)ENSG00000168899
Phylogenetic Trees/Animal Genes : TreeFamVAMP5
HOVERGENO95183
HOGENOMO95183
Homologs : HomoloGeneVAMP5
Homology/Alignments : Family Browser (UCSC)VAMP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVAMP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAMP5
dbVarVAMP5
ClinVarVAMP5
1000_GenomesVAMP5 
Exome Variant ServerVAMP5
ExAC (Exome Aggregation Consortium)VAMP5 (select the gene name)
Genetic variants : HAPMAP10791
Genomic Variants (DGV)VAMP5 [DGVbeta]
DECIPHERVAMP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVAMP5 
Mutations
ICGC Data PortalVAMP5 
TCGA Data PortalVAMP5 
Broad Tumor PortalVAMP5
OASIS PortalVAMP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVAMP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVAMP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VAMP5
DgiDB (Drug Gene Interaction Database)VAMP5
DoCM (Curated mutations)VAMP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VAMP5 (select a term)
intoGenVAMP5
Cancer3DVAMP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607029   
Orphanet
MedgenVAMP5
Genetic Testing Registry VAMP5
NextProtO95183 [Medical]
TSGene10791
GENETestsVAMP5
Target ValidationVAMP5
Huge Navigator VAMP5 [HugePedia]
snp3D : Map Gene to Disease10791
BioCentury BCIQVAMP5
ClinGenVAMP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10791
Chemical/Pharm GKB GenePA37270
Clinical trialVAMP5
Miscellaneous
canSAR (ICR)VAMP5 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVAMP5
EVEXVAMP5
GoPubMedVAMP5
iHOPVAMP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:18:37 CEST 2017

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