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VANGL1 (VANGL planar cell polarity protein 1)

Identity

Alias_namesvang (van gogh, Drosophila)-like 1, vang, van gogh-like 1 (Drosophila)
vang-like 1 (van gogh, Drosophila)
Alias_symbol (synonym)STB2
Other aliasKITENIN
LPP2
STBM2
HGNC (Hugo) VANGL1
LocusID (NCBI) 81839
Atlas_Id 50805
Location 1p13.1  [Link to chromosome band 1p13]
Location_base_pair Starts at 115641953 and ends at 115698224 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP1A1 (1p13.1) / VANGL1 (1p13.1)MAN1A2 (1p12) / VANGL1 (1p13.1)VANGL1 (1p13.1) / HAO2 (1p12)
VANGL1 (1p13.1) / PARP12 (7q34)VANGL1 (1p13.1) / VANGL1 (1p13.1)ATP1A1 1p13.1 / VANGL1 1p13.1
MAN1A2 1p12 / VANGL1 1p13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]

Solid Tumors TranslocLungAdenocarcID6751 TT_t0101p12p13ID103506 TT_t0101p13p12ID6758 TT_t0101p13p13ID103516


External links

Nomenclature
HGNC (Hugo)VANGL1   15512
Cards
Entrez_Gene (NCBI)VANGL1  81839  VANGL planar cell polarity protein 1
AliasesKITENIN; LPP2; STB2; STBM2
GeneCards (Weizmann)VANGL1
Ensembl hg19 (Hinxton)ENSG00000173218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173218 [Gene_View]  ENSG00000173218 [Sequence]  chr1:115641953-115698224 [Contig_View]  VANGL1 [Vega]
ICGC DataPortalENSG00000173218
TCGA cBioPortalVANGL1
AceView (NCBI)VANGL1
Genatlas (Paris)VANGL1
WikiGenes81839
SOURCE (Princeton)VANGL1
Genetics Home Reference (NIH)VANGL1
Genomic and cartography
GoldenPath hg38 (UCSC)VANGL1  -     chr1:115641953-115698224 +  1p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VANGL1  -     1p13.1   [Description]    (hg19-Feb_2009)
GoldenPathVANGL1 - 1p13.1 [CytoView hg19]  VANGL1 - 1p13.1 [CytoView hg38]
ImmunoBaseENSG00000173218
Mapping of homologs : NCBIVANGL1 [Mapview hg19]  VANGL1 [Mapview hg38]
OMIM182940   600145   610132   
Gene and transcription
Genbank (Entrez)AB057596 AB075805 AF481859 AK312087 BC000907
RefSeq transcript (Entrez)NM_001172411 NM_001172412 NM_138959
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VANGL1
Alternative Splicing GalleryENSG00000173218
Gene ExpressionVANGL1 [ NCBI-GEO ]   VANGL1 [ EBI - ARRAY_EXPRESS ]   VANGL1 [ SEEK ]   VANGL1 [ MEM ]
Gene Expression Viewer (FireBrowse)VANGL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)81839
GTEX Portal (Tissue expression)VANGL1
Human Protein AtlasENSG00000173218-VANGL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VANGL1
DMDM Disease mutations81839
Blocks (Seattle)VANGL1
Human Protein Atlas [tissue]ENSG00000173218-VANGL1 [tissue]
HPRD18279
IPIIPI00031195   IPI00386349   IPI00063848   
Protein Interaction databases
FunCoupENSG00000173218
BioGRIDVANGL1
STRING (EMBL)VANGL1
ZODIACVANGL1
Ontologies - Pathways
Huge Navigator VANGL1 [HugePedia]
snp3D : Map Gene to Disease81839
BioCentury BCIQVANGL1
ClinGenVANGL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81839
Chemical/Pharm GKB GenePA37971
Clinical trialVANGL1
Miscellaneous
canSAR (ICR)VANGL1 (select the gene name)
DataMed IndexVANGL1
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVANGL1
EVEXVANGL1
GoPubMedVANGL1
iHOPVANGL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:16:05 CET 2020

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