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VANGL1 (VANGL planar cell polarity protein 1)

Identity

Other namesKITENIN
LPP2
STB2
STBM2
HGNC (Hugo) VANGL1
LocusID (NCBI) 81839
Location 1p13.1
Location_base_pair Starts at 116184574 and ends at 116240845 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VANGL1   15512
Cards
Entrez_Gene (NCBI)VANGL1  81839  VANGL planar cell polarity protein 1
GeneCards (Weizmann)VANGL1
Ensembl (Hinxton)ENSG00000173218 [Gene_View]  chr1:116184574-116240845 [Contig_View]  VANGL1 [Vega]
ICGC DataPortalENSG00000173218
cBioPortalVANGL1
AceView (NCBI)VANGL1
Genatlas (Paris)VANGL1
WikiGenes81839
SOURCE (Princeton)NM_001172411 NM_001172412 NM_138959
Genomic and cartography
GoldenPath (UCSC)VANGL1  -  1p13.1   chr1:116184574-116240845 +  1p13.1   [Description]    (hg19-Feb_2009)
EnsemblVANGL1 - 1p13.1 [CytoView]
Mapping of homologs : NCBIVANGL1 [Mapview]
OMIM182940   600145   610132   
Gene and transcription
Genbank (Entrez)AB057596 AB075805 AF481859 AK312087 BC000907
RefSeq transcript (Entrez)NM_001172411 NM_001172412 NM_138959
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_016548 NT_032977 NW_001838594 NW_004929290
Consensus coding sequences : CCDS (NCBI)VANGL1
Cluster EST : UnigeneHs.515130 [ NCBI ]
CGAP (NCI)Hs.515130
Alternative Splicing : Fast-db (Paris)GSHG0000838
Alternative Splicing GalleryENSG00000173218
Gene ExpressionVANGL1 [ NCBI-GEO ]     VANGL1 [ SEEK ]   VANGL1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAA9 (Uniprot)
NextProtQ8TAA9  [Medical]
With graphics : InterProQ8TAA9
Splice isoforms : SwissVarQ8TAA9 (Swissvar)
Domains : Interpro (EBI)Strabismus [organisation]  
Related proteins : CluSTrQ8TAA9
Domain families : Pfam (Sanger)Strabismus (PF06638)   
Domain families : Pfam (NCBI)pfam06638   
DMDM Disease mutations81839
Blocks (Seattle)Q8TAA9
Human Protein AtlasENSG00000173218 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8TAA9
HPRD18279
IPIIPI00031195   IPI00386349   IPI00063848   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAA9
IntAct (EBI)Q8TAA9
FunCoupENSG00000173218
BioGRIDVANGL1
InParanoidQ8TAA9
Interologous Interaction database Q8TAA9
IntegromeDBVANGL1
STRING (EMBL)VANGL1
Ontologies - Pathways
Ontology : AmiGOprotein binding  plasma membrane  multicellular organismal development  integral component of membrane  
Ontology : EGO-EBIprotein binding  plasma membrane  multicellular organismal development  integral component of membrane  
Pathways : KEGGWnt signaling pathway   
Protein Interaction DatabaseVANGL1
Wikipedia pathwaysVANGL1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)VANGL1
snp3D : Map Gene to Disease81839
SNP (GeneSNP Utah)VANGL1
SNP : HGBaseVANGL1
Genetic variants : HAPMAPVANGL1
Exome VariantVANGL1
1000_GenomesVANGL1 
ICGC programENSG00000173218 
Somatic Mutations in Cancer : COSMICVANGL1 
CONAN: Copy Number AnalysisVANGL1 
Mutations and Diseases : HGMDVANGL1
Genomic VariantsVANGL1  VANGL1 [DGVbeta]
dbVarVANGL1
ClinVarVANGL1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM182940    600145    610132   
MedgenVANGL1
GENETestsVANGL1
Disease Genetic AssociationVANGL1
Huge Navigator VANGL1 [HugePedia]  VANGL1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneVANGL1
Homology/Alignments : Family Browser (UCSC)VANGL1
Phylogenetic Trees/Animal Genes : TreeFamVANGL1
Chemical/Protein Interactions : CTD81839
Chemical/Pharm GKB GenePA37971
Clinical trialVANGL1
Cancer Resource (Charite)ENSG00000173218
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineVANGL1
iHOPVANGL1
OncoSearchVANGL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:21:07 CEST 2014

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