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VASH1 (vasohibin 1)

Identity

Alias_namesKIAA1036
KIAA1036
Other alias
HGNC (Hugo) VASH1
LocusID (NCBI) 22846
Atlas_Id 50156
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 76761892 and ends at 76783020 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VASH1 (14q24.3) / FN1 (2q35)VASH1 (14q24.3) / PRKCH (14q23.1)VASH1 (14q24.3) / PRKDC (8q11.21)
VASH1 (14q24.3) / UGGT1 (2q14.3)VASH1 (14q24.3) / ZNF550 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VASH1   19964
Cards
Entrez_Gene (NCBI)VASH1  22846  vasohibin 1
AliasesKIAA1036
GeneCards (Weizmann)VASH1
Ensembl hg19 (Hinxton)ENSG00000071246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000071246 [Gene_View]  chr14:76761892-76783020 [Contig_View]  VASH1 [Vega]
ICGC DataPortalENSG00000071246
TCGA cBioPortalVASH1
AceView (NCBI)VASH1
Genatlas (Paris)VASH1
WikiGenes22846
SOURCE (Princeton)VASH1
Genetics Home Reference (NIH)VASH1
Genomic and cartography
GoldenPath hg38 (UCSC)VASH1  -     chr14:76761892-76783020 +  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VASH1  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblVASH1 - 14q24.3 [CytoView hg19]  VASH1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIVASH1 [Mapview hg19]  VASH1 [Mapview hg38]
OMIM609011   
Gene and transcription
Genbank (Entrez)AB028959 AF055021 AK094330 AK291377 AL041425
RefSeq transcript (Entrez)NM_014909
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VASH1
Cluster EST : UnigeneHs.525479 [ NCBI ]
CGAP (NCI)Hs.525479
Alternative Splicing GalleryENSG00000071246
Gene ExpressionVASH1 [ NCBI-GEO ]   VASH1 [ EBI - ARRAY_EXPRESS ]   VASH1 [ SEEK ]   VASH1 [ MEM ]
Gene Expression Viewer (FireBrowse)VASH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22846
GTEX Portal (Tissue expression)VASH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L8A9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L8A9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L8A9
Splice isoforms : SwissVarQ7L8A9
PhosPhoSitePlusQ7L8A9
Domains : Interpro (EBI)Vasohibin    Vasohibin-1   
Domain families : Pfam (Sanger)Vasohibin (PF14822)   
Domain families : Pfam (NCBI)pfam14822   
Conserved Domain (NCBI)VASH1
DMDM Disease mutations22846
Blocks (Seattle)VASH1
SuperfamilyQ7L8A9
Human Protein AtlasENSG00000071246
Peptide AtlasQ7L8A9
HPRD12353
IPIIPI00007168   IPI00552287   IPI01025951   IPI01025354   
Protein Interaction databases
DIP (DOE-UCLA)Q7L8A9
IntAct (EBI)Q7L8A9
FunCoupENSG00000071246
BioGRIDVASH1
STRING (EMBL)VASH1
ZODIACVASH1
Ontologies - Pathways
QuickGOQ7L8A9
Ontology : AmiGOangiogenesis  negative regulation of endothelial cell proliferation  protein binding  extracellular space  cytoplasm  endoplasmic reticulum  cell cycle arrest  response to wounding  negative regulation of endothelial cell migration  negative regulation of angiogenesis  negative regulation of angiogenesis  negative regulation of blood vessel endothelial cell migration  apical part of cell  labyrinthine layer blood vessel development  negative regulation of lymphangiogenesis  regulation of cellular senescence  
Ontology : EGO-EBIangiogenesis  negative regulation of endothelial cell proliferation  protein binding  extracellular space  cytoplasm  endoplasmic reticulum  cell cycle arrest  response to wounding  negative regulation of endothelial cell migration  negative regulation of angiogenesis  negative regulation of angiogenesis  negative regulation of blood vessel endothelial cell migration  apical part of cell  labyrinthine layer blood vessel development  negative regulation of lymphangiogenesis  regulation of cellular senescence  
NDEx NetworkVASH1
Atlas of Cancer Signalling NetworkVASH1
Wikipedia pathwaysVASH1
Orthology - Evolution
OrthoDB22846
GeneTree (enSembl)ENSG00000071246
Phylogenetic Trees/Animal Genes : TreeFamVASH1
HOVERGENQ7L8A9
HOGENOMQ7L8A9
Homologs : HomoloGeneVASH1
Homology/Alignments : Family Browser (UCSC)VASH1
Gene fusions - Rearrangements
Fusion Cancer (Beijing)VASH1 [14q24.3]  -  FN1 [2q35]  [FUSC003504]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVASH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VASH1
dbVarVASH1
ClinVarVASH1
1000_GenomesVASH1 
Exome Variant ServerVASH1
ExAC (Exome Aggregation Consortium)VASH1 (select the gene name)
Genetic variants : HAPMAP22846
Genomic Variants (DGV)VASH1 [DGVbeta]
DECIPHERVASH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVASH1 
Mutations
ICGC Data PortalVASH1 
TCGA Data PortalVASH1 
Broad Tumor PortalVASH1
OASIS PortalVASH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVASH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVASH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VASH1
DgiDB (Drug Gene Interaction Database)VASH1
DoCM (Curated mutations)VASH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VASH1 (select a term)
intoGenVASH1
Cancer3DVASH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609011   
Orphanet
MedgenVASH1
Genetic Testing Registry VASH1
NextProtQ7L8A9 [Medical]
TSGene22846
GENETestsVASH1
Huge Navigator VASH1 [HugePedia]
snp3D : Map Gene to Disease22846
BioCentury BCIQVASH1
ClinGenVASH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22846
Chemical/Pharm GKB GenePA134941450
Clinical trialVASH1
Miscellaneous
canSAR (ICR)VASH1 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVASH1
EVEXVASH1
GoPubMedVASH1
iHOPVASH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:43:44 CEST 2017

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