Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VASH2 (vasohibin 2)

Identity

Alias_symbol (synonym)FLJ12505
Other alias-
HGNC (Hugo) VASH2
LocusID (NCBI) 79805
Atlas_Id 53356
Location 1q32.3  [Link to chromosome band 1q32]
Location_base_pair Starts at 212950520 and ends at 212991585 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAD54L (1p34.1) / VASH2 (1q32.3)SLC9A3R1 (17q25.1) / VASH2 (1q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VASH2   25723
Cards
Entrez_Gene (NCBI)VASH2  79805  vasohibin 2
Aliases
GeneCards (Weizmann)VASH2
Ensembl hg19 (Hinxton)ENSG00000143494 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143494 [Gene_View]  chr1:212950520-212991585 [Contig_View]  VASH2 [Vega]
ICGC DataPortalENSG00000143494
TCGA cBioPortalVASH2
AceView (NCBI)VASH2
Genatlas (Paris)VASH2
WikiGenes79805
SOURCE (Princeton)VASH2
Genetics Home Reference (NIH)VASH2
Genomic and cartography
GoldenPath hg38 (UCSC)VASH2  -     chr1:212950520-212991585 +  1q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VASH2  -     1q32.3   [Description]    (hg19-Feb_2009)
EnsemblVASH2 - 1q32.3 [CytoView hg19]  VASH2 - 1q32.3 [CytoView hg38]
Mapping of homologs : NCBIVASH2 [Mapview hg19]  VASH2 [Mapview hg38]
OMIM610471   
Gene and transcription
Genbank (Entrez)AK022567 AK096605 AK290973 AK302675 AY834202
RefSeq transcript (Entrez)NM_001136474 NM_001136475 NM_001301056 NM_024749
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VASH2
Cluster EST : UnigeneHs.96885 [ NCBI ]
CGAP (NCI)Hs.96885
Alternative Splicing GalleryENSG00000143494
Gene ExpressionVASH2 [ NCBI-GEO ]   VASH2 [ EBI - ARRAY_EXPRESS ]   VASH2 [ SEEK ]   VASH2 [ MEM ] /TR>
Gene Expression Viewer (FireBrowse)VASH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79805
GTEX Portal (Tissue expression)VASH2
Human Protein AtlasENSG00000143494-VASH2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V25
Splice isoforms : SwissVarQ86V25
PhosPhoSitePlusQ86V25
Domains : Interpro (EBI)Vasohibin   
Domain families : Pfam (Sanger)Vasohibin (PF14822)   
Domain families : Pfam (NCBI)pfam14822   
Conserved Domain (NCBI)VASH2
DMDM Disease mutations79805
Blocks (Seattle)VASH2
SuperfamilyQ86V25
Human Protein Atlas [tissue]ENSG00000143494-VASH2 [tissue]
Peptide AtlasQ86V25
HPRD08574
IPIIPI00555607   IPI00386499   IPI00940695   IPI00556467   IPI00328783   IPI00946255   IPI00555657   
Protein Interaction databases
DIP (DOE-UCLA)Q86V25
IntAct (EBI)Q86V25
FunCoupENSG00000143494
BioGRIDVASH2
STRING (EMBL)VASH2
ZODIACVASH2
Ontologies - Pathways
QuickGOQ86V25
Ontology : AmiGOsyncytium formation by plasma membrane fusion  positive regulation of endothelial cell proliferation  extracellular region  cytoplasm  plasma membrane fusion  plasma membrane fusion  positive regulation of angiogenesis  labyrinthine layer blood vessel development  
Ontology : EGO-EBIsyncytium formation by plasma membrane fusion  positive regulation of endothelial cell proliferation  extracellular region  cytoplasm  plasma membrane fusion  plasma membrane fusion  positive regulation of angiogenesis  labyrinthine layer blood vessel development  
NDEx NetworkVASH2
Atlas of Cancer Signalling NetworkVASH2
Wikipedia pathwaysVASH2
Orthology - Evolution
OrthoDB79805
GeneTree (enSembl)ENSG00000143494
Phylogenetic Trees/Animal Genes : TreeFamVASH2
HOVERGENQ86V25
HOGENOMQ86V25
Homologs : HomoloGeneVASH2
Homology/Alignments : Family Browser (UCSC)VASH2
Gene fusions - Rearrangements
Tumor Fusion PortalVASH2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVASH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VASH2
dbVarVASH2
ClinVarVASH2
1000_GenomesVASH2 
Exome Variant ServerVASH2
ExAC (Exome Aggregation Consortium)ENSG00000143494
GNOMAD BrowserENSG00000143494
Genetic variants : HAPMAP79805
Genomic Variants (DGV)VASH2 [DGVbeta]
DECIPHERVASH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVASH2 
Mutations
ICGC Data PortalVASH2 
TCGA Data PortalVASH2 
Broad Tumor PortalVASH2
OASIS PortalVASH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVASH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVASH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VASH2
DgiDB (Drug Gene Interaction Database)VASH2
DoCM (Curated mutations)VASH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VASH2 (select a term)
intoGenVASH2
Cancer3DVASH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610471   
Orphanet
DisGeNETVASH2
MedgenVASH2
Genetic Testing Registry VASH2
NextProtQ86V25 [Medical]
TSGene79805
GENETestsVASH2
Target ValidationVASH2
Huge Navigator VASH2 [HugePedia]
snp3D : Map Gene to Disease79805
BioCentury BCIQVASH2
ClinGenVASH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79805
Chemical/Pharm GKB GenePA145147736
Clinical trialVASH2
Miscellaneous
canSAR (ICR)VASH2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVASH2
EVEXVASH2
GoPubMedVASH2
iHOPVASH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:41:14 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.