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VASP (vasodilator-stimulated phosphoprotein)

Identity

Other names-
HGNC (Hugo) VASP
LocusID (NCBI) 7408
Location 19q13.32
Location_base_pair Starts at 46010688 and ends at 46030240 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VASP   12652
Entrez_Gene (NCBI)VASP  7408  vasodilator-stimulated phosphoprotein
Cards
GeneCards (Weizmann)VASP
Ensembl (Hinxton)ENSG00000125753 [Gene_View]  chr19:46010688-46030240 [Contig_View]  VASP [Vega]
AceView (NCBI)VASP
Genatlas (Paris)VASP
SOURCE (Stanford)NM_001008736 NM_003370
Genomic and cartography
GoldenPath (UCSC)VASP  -  19q13.32   chr19:46010688-46030240 +  19q13.32   [Description]    (hg19-Feb_2009)
EnsemblVASP - 19q13.32 [CytoView]
Mapping of homologs : NCBIVASP [Mapview]
OMIM601703   
Gene and transcription
Genbank (Entrez)AK314812 AL556269 BC026019 BC038224 BG751094
RefSeq transcript (SRS)NM_001008736 NM_003370
RefSeq transcript (Entrez)NM_001008736 NM_003370
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838496 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838496 NW_004078099
Consensus coding sequences : CCDS (NCBI)VASP
Cluster EST : UnigeneHs.515469 [ SRS ] Hs.515469 [ NCBI ]
CGAP (NCI)Hs.515469
Alternative Splicing : Fast-db (Paris)GSHG0015020
Alternative Splicing GalleryENSG00000125753
Gene ExpressionVASP [ NCBI-GEO ]   VASP [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50552 (SRS) P50552 (Uniprot)
NextProtP50552
With graphics : InterProP50552
Splice isoforms : SwissVarP50552(Swissvar)
Domaine pattern : Prosite (SRS)WH1 (PS50229)   
Domaine pattern : Prosite (Expaxy)WH1 (PS50229)   
Domains : Interpro (SRS)EVH1    PH_like_dom    Vasodilator_phosphoprotein    VASP_tetra   
Domains : Interpro (EBI)EVH1    PH_like_dom    Vasodilator_phosphoprotein    VASP_tetra   
Related proteins : CluSTrP50552
Domain families : Pfam (SRS)VASP_tetra (PF08776)    WH1 (PF00568)   
Domain families : Pfam (Sanger)VASP_tetra (PF08776)    WH1 (PF00568)   
Domain families : Pfam (NCBI)pfam08776    pfam00568   
Domain families : Smart (EMBL)WH1 (SM00461)  
DMDM7408
Blocks (Seattle)P50552
PDB (SRS)1EGX    1JNG    1USD    1USE    2PAV    2PBD    3CHW   
PDB (PDBSum)1EGX    1JNG    1USD    1USE    2PAV    2PBD    3CHW   
PDB (IMB)1EGX    1JNG    1USD    1USE    2PAV    2PBD    3CHW   
PDB (RSDB)1EGX    1JNG    1USD    1USE    2PAV    2PBD    3CHW   
Human Protein AtlasENSG00000125753
HPRD03415
IPIIPI00301058   
Protein Interaction databases
DIP (DOE-UCLA)P50552
IntAct (EBI)P50552
FunCoupENSG00000125753
REACTOMEVASP
Protein Interaction Database7408
BioGRIDVASP
InParanoidP50552
Interologous Interaction database P50552
IntegromeDBVASP
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)VASP
SNP (GeneSNP Utah)VASP
SNP : HGBaseVASP
Genetic variants : HAPMAPVASP
Somatic Mutations in Cancer : COSMICVASP 
CONAN: Copy Number AnalysisVASP 
Mutations and Diseases : HGMDVASP
OMIM601703   
GENETests601703   
Disease Genetic AssociationVASP
Huge Navigator VASP [HugePedia]  VASP [HugeCancerGEM]
Genomic VariantsVASP  VASP [DGVbeta]
snp3D : Map Gene to Disease7408
General knowledge
Homologs : HomoloGeneVASP
Homology/Alignments : Family Browser (UCSC)VASP
Phylogenetic Trees/Animal Genes : TreeFamVASP
Chemical/Protein Interactions : CTD7408
Chemical/Pharm GKB GenePA37276
Clinical trialVASP
Cancer Resource (Charite)ENSG00000125753
Ontology : AmiGOneural tube closure  actin binding  protein binding  profilin binding  cytoplasm  cytosol  plasma membrane  focal adhesion  axon guidance  actin polymerization or depolymerization  actin cytoskeleton  SH3 domain binding  lamellipodium membrane  filopodium membrane  cell junction assembly  T cell receptor signaling pathway  protein homotetramerization  
Ontology : EGO-EBIneural tube closure  actin binding  protein binding  profilin binding  cytoplasm  cytosol  plasma membrane  focal adhesion  axon guidance  actin polymerization or depolymerization  actin cytoskeleton  SH3 domain binding  lamellipodium membrane  filopodium membrane  cell junction assembly  T cell receptor signaling pathway  protein homotetramerization  
Pathways : KEGGLeukocyte transendothelial migrationFocal adhesion
Other databases
Probes
Litterature
PubMed115 Pubmed reference(s) in Entrez
PubGeneVASP
iHOPVASP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:43:57 CEST 2013
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