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VAT1 (vesicle amine transport 1)

Identity

Alias_namesvesicle amine transport protein 1 homolog (T. californica)
Alias_symbol (synonym)VATI
FLJ20230
Other alias
HGNC (Hugo) VAT1
LocusID (NCBI) 10493
Atlas_Id 53948
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43014605 and ends at 43022442 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASPH (8q12.3) / VAT1 (17q21.31)MRPS25 (3p25.1) / VAT1 (17q21.31)VAT1 (17q21.31) / GOLM1 (9q21.33)
VAT1 (17q21.31) / HNRNPA1 (12q13.13)VAT1 (17q21.31) / MAVS (20p13)VAT1 (17q21.31) / MPST (22q12.3)
VAT1 (17q21.31) / VAT1 (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VAT1   16919
Cards
Entrez_Gene (NCBI)VAT1  10493  vesicle amine transport 1
AliasesVATI
GeneCards (Weizmann)VAT1
Ensembl hg19 (Hinxton)ENSG00000108828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108828 [Gene_View]  chr17:43014605-43022442 [Contig_View]  VAT1 [Vega]
ICGC DataPortalENSG00000108828
TCGA cBioPortalVAT1
AceView (NCBI)VAT1
Genatlas (Paris)VAT1
WikiGenes10493
SOURCE (Princeton)VAT1
Genetics Home Reference (NIH)VAT1
Genomic and cartography
GoldenPath hg38 (UCSC)VAT1  -     chr17:43014605-43022442 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VAT1  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblVAT1 - 17q21.31 [CytoView hg19]  VAT1 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIVAT1 [Mapview hg19]  VAT1 [Mapview hg38]
OMIM604631   
Gene and transcription
Genbank (Entrez)AK097072 AK290460 AK298536 AK315838 BC001913
RefSeq transcript (Entrez)NM_006373
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VAT1
Cluster EST : UnigeneHs.514199 [ NCBI ]
CGAP (NCI)Hs.514199
Alternative Splicing GalleryENSG00000108828
Gene ExpressionVAT1 [ NCBI-GEO ]   VAT1 [ EBI - ARRAY_EXPRESS ]   VAT1 [ SEEK ]   VAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)VAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10493
GTEX Portal (Tissue expression)VAT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99536   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99536  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99536
Splice isoforms : SwissVarQ99536
PhosPhoSitePlusQ99536
Domaine pattern : Prosite (Expaxy)QOR_ZETA_CRYSTAL (PS01162)   
Domains : Interpro (EBI)ADH_C    ADH_N    GroES-like    NAD(P)-bd_dom    PKS_ER    Quin_OxRdtase/zeta-crystal_CS   
Domain families : Pfam (Sanger)ADH_N (PF08240)    ADH_zinc_N (PF00107)   
Domain families : Pfam (NCBI)pfam08240    pfam00107   
Domain families : Smart (EMBL)PKS_ER (SM00829)  
Conserved Domain (NCBI)VAT1
DMDM Disease mutations10493
Blocks (Seattle)VAT1
SuperfamilyQ99536
Human Protein AtlasENSG00000108828
Peptide AtlasQ99536
HPRD05220
IPIIPI00156689   IPI01010637   IPI00942344   IPI00184402   
Protein Interaction databases
DIP (DOE-UCLA)Q99536
IntAct (EBI)Q99536
FunCoupENSG00000108828
BioGRIDVAT1
STRING (EMBL)VAT1
ZODIACVAT1
Ontologies - Pathways
QuickGOQ99536
Ontology : AmiGOextracellular region  mitochondrial outer membrane  zinc ion binding  negative regulation of mitochondrial fusion  integral component of membrane  oxidoreductase activity  azurophil granule lumen  neutrophil degranulation  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIextracellular region  mitochondrial outer membrane  zinc ion binding  negative regulation of mitochondrial fusion  integral component of membrane  oxidoreductase activity  azurophil granule lumen  neutrophil degranulation  oxidation-reduction process  extracellular exosome  
NDEx NetworkVAT1
Atlas of Cancer Signalling NetworkVAT1
Wikipedia pathwaysVAT1
Orthology - Evolution
OrthoDB10493
GeneTree (enSembl)ENSG00000108828
Phylogenetic Trees/Animal Genes : TreeFamVAT1
HOVERGENQ99536
HOGENOMQ99536
Homologs : HomoloGeneVAT1
Homology/Alignments : Family Browser (UCSC)VAT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAT1
dbVarVAT1
ClinVarVAT1
1000_GenomesVAT1 
Exome Variant ServerVAT1
ExAC (Exome Aggregation Consortium)VAT1 (select the gene name)
Genetic variants : HAPMAP10493
Genomic Variants (DGV)VAT1 [DGVbeta]
DECIPHERVAT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVAT1 
Mutations
ICGC Data PortalVAT1 
TCGA Data PortalVAT1 
Broad Tumor PortalVAT1
OASIS PortalVAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVAT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VAT1
DgiDB (Drug Gene Interaction Database)VAT1
DoCM (Curated mutations)VAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VAT1 (select a term)
intoGenVAT1
Cancer3DVAT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604631   
Orphanet
MedgenVAT1
Genetic Testing Registry VAT1
NextProtQ99536 [Medical]
TSGene10493
GENETestsVAT1
Target ValidationVAT1
Huge Navigator VAT1 [HugePedia]
snp3D : Map Gene to Disease10493
BioCentury BCIQVAT1
ClinGenVAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10493
Chemical/Pharm GKB GenePA38422
Clinical trialVAT1
Miscellaneous
canSAR (ICR)VAT1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVAT1
EVEXVAT1
GoPubMedVAT1
iHOPVAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:24 CEST 2017

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