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VAT1 (vesicle amine transport 1)

Identity

Alias (NCBI)VATI
HGNC (Hugo) VAT1
HGNC Alias symbVATI
FLJ20230
HGNC Previous namevesicle amine transport protein 1 homolog (T. californica)
LocusID (NCBI) 10493
Atlas_Id 53948
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43014607 and ends at 43022385 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASPH (8q12.3) / VAT1 (17q21.31)MRPS25 (3p25.1) / VAT1 (17q21.31)VAT1 (17q21.31) / GOLM1 (9q21.33)
VAT1 (17q21.31) / HNRNPA1 (12q13.13)VAT1 (17q21.31) / MAVS (20p13)VAT1 (17q21.31) / MPST (22q12.3)
VAT1 (17q21.31) / VAT1 (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)VAT1   16919
Cards
Entrez_Gene (NCBI)VAT1    vesicle amine transport 1
AliasesVATI
GeneCards (Weizmann)VAT1
Ensembl hg19 (Hinxton)ENSG00000108828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108828 [Gene_View]  ENSG00000108828 [Sequence]  chr17:43014607-43022385 [Contig_View]  VAT1 [Vega]
ICGC DataPortalENSG00000108828
TCGA cBioPortalVAT1
AceView (NCBI)VAT1
Genatlas (Paris)VAT1
SOURCE (Princeton)VAT1
Genetics Home Reference (NIH)VAT1
Genomic and cartography
GoldenPath hg38 (UCSC)VAT1  -     chr17:43014607-43022385 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VAT1  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathVAT1 - 17q21.31 [CytoView hg19]  VAT1 - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000108828
Genome Data Viewer NCBIVAT1 [Mapview hg19]  
OMIM604631   
Gene and transcription
Genbank (Entrez)AK097072 AK290460 AK298536 AK315838 BC001913
RefSeq transcript (Entrez)NM_006373
Consensus coding sequences : CCDS (NCBI)VAT1
Gene ExpressionVAT1 [ NCBI-GEO ]   VAT1 [ EBI - ARRAY_EXPRESS ]   VAT1 [ SEEK ]   VAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)VAT1 [ Firebrowse - Broad ]
GenevisibleExpression of VAT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10493
GTEX Portal (Tissue expression)VAT1
Human Protein AtlasENSG00000108828-VAT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99536   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99536  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99536
PhosPhoSitePlusQ99536
Domaine pattern : Prosite (Expaxy)QOR_ZETA_CRYSTAL (PS01162)   
Domains : Interpro (EBI)ADH_N    GroES-like_sf    NAD(P)-bd_dom_sf    PKS_ER    Quin_OxRdtase/zeta-crystal_CS   
Domain families : Pfam (Sanger)ADH_N (PF08240)   
Domain families : Pfam (NCBI)pfam08240   
Domain families : Smart (EMBL)PKS_ER (SM00829)  
Conserved Domain (NCBI)VAT1
PDB (RSDB)6K9Y   
PDB Europe6K9Y   
PDB (PDBSum)6K9Y   
PDB (IMB)6K9Y   
Structural Biology KnowledgeBase6K9Y   
SCOP (Structural Classification of Proteins)6K9Y   
CATH (Classification of proteins structures)6K9Y   
SuperfamilyQ99536
AlphaFold pdb e-kbQ99536   
Human Protein Atlas [tissue]ENSG00000108828-VAT1 [tissue]
HPRD05220
Protein Interaction databases
DIP (DOE-UCLA)Q99536
IntAct (EBI)Q99536
BioGRIDVAT1
STRING (EMBL)VAT1
ZODIACVAT1
Ontologies - Pathways
QuickGOQ99536
Ontology : AmiGOprotein binding  extracellular region  mitochondrial outer membrane  zinc ion binding  negative regulation of mitochondrial fusion  integral component of membrane  oxidoreductase activity  azurophil granule lumen  neutrophil degranulation  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular region  mitochondrial outer membrane  zinc ion binding  negative regulation of mitochondrial fusion  integral component of membrane  oxidoreductase activity  azurophil granule lumen  neutrophil degranulation  extracellular exosome  
NDEx NetworkVAT1
Atlas of Cancer Signalling NetworkVAT1
Wikipedia pathwaysVAT1
Orthology - Evolution
OrthoDB10493
GeneTree (enSembl)ENSG00000108828
Phylogenetic Trees/Animal Genes : TreeFamVAT1
Homologs : HomoloGeneVAT1
Homology/Alignments : Family Browser (UCSC)VAT1
Gene fusions - Rearrangements
Fusion : QuiverVAT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAT1
dbVarVAT1
ClinVarVAT1
MonarchVAT1
1000_GenomesVAT1 
Exome Variant ServerVAT1
GNOMAD BrowserENSG00000108828
Varsome BrowserVAT1
ACMGVAT1 variants
VarityQ99536
Genomic Variants (DGV)VAT1 [DGVbeta]
DECIPHERVAT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVAT1 
Mutations
ICGC Data PortalVAT1 
TCGA Data PortalVAT1 
Broad Tumor PortalVAT1
OASIS PortalVAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVAT1
Mutations and Diseases : HGMDVAT1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVAT1
DgiDB (Drug Gene Interaction Database)VAT1
DoCM (Curated mutations)VAT1
CIViC (Clinical Interpretations of Variants in Cancer)VAT1
Cancer3DVAT1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604631   
Orphanet
DisGeNETVAT1
MedgenVAT1
Genetic Testing Registry VAT1
NextProtQ99536 [Medical]
GENETestsVAT1
Target ValidationVAT1
Huge Navigator VAT1 [HugePedia]
ClinGenVAT1
Clinical trials, drugs, therapy
MyCancerGenomeVAT1
Protein Interactions : CTDVAT1
Pharm GKB GenePA38422
PharosQ99536
Clinical trialVAT1
Miscellaneous
canSAR (ICR)VAT1
HarmonizomeVAT1
DataMed IndexVAT1
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:55 CEST 2021

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