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VAT1L (vesicle amine transport 1-like)

Identity

Alias_namesvesicle amine transport protein 1 homolog (T. californica)-like
vesicle amine transport 1-like
Alias_symbol (synonym)KIAA1576
Other alias-
HGNC (Hugo) VAT1L
LocusID (NCBI) 57687
Atlas_Id 75585
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 77822461 and ends at 78014004 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NSF (17q21.31) / VAT1L (16q23.1)S100A9 (1q21.3) / VAT1L (16q23.1)WWOX (16q23.1) / VAT1L (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VAT1L   29315
Cards
Entrez_Gene (NCBI)VAT1L  57687  vesicle amine transport 1-like
Aliases
GeneCards (Weizmann)VAT1L
Ensembl hg19 (Hinxton)ENSG00000171724 [Gene_View]  chr16:77822461-78014004 [Contig_View]  VAT1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000171724 [Gene_View]  chr16:77822461-78014004 [Contig_View]  VAT1L [Vega]
ICGC DataPortalENSG00000171724
TCGA cBioPortalVAT1L
AceView (NCBI)VAT1L
Genatlas (Paris)VAT1L
WikiGenes57687
SOURCE (Princeton)VAT1L
Genetics Home Reference (NIH)VAT1L
Genomic and cartography
GoldenPath hg19 (UCSC)VAT1L  -     chr16:77822461-78014004 +  16q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VAT1L  -     16q23.1   [Description]    (hg38-Dec_2013)
EnsemblVAT1L - 16q23.1 [CytoView hg19]  VAT1L - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBIVAT1L [Mapview hg19]  VAT1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA609348 AB046796 AK001256 AK290153 AL834240
RefSeq transcript (Entrez)NM_020927
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)VAT1L
Cluster EST : UnigeneHs.461405 [ NCBI ]
CGAP (NCI)Hs.461405
Alternative Splicing GalleryENSG00000171724
Gene ExpressionVAT1L [ NCBI-GEO ]   VAT1L [ EBI - ARRAY_EXPRESS ]   VAT1L [ SEEK ]   VAT1L [ MEM ]
Gene Expression Viewer (FireBrowse)VAT1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57687
GTEX Portal (Tissue expression)VAT1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCJ6
Splice isoforms : SwissVarQ9HCJ6
PhosPhoSitePlusQ9HCJ6
Domaine pattern : Prosite (Expaxy)QOR_ZETA_CRYSTAL (PS01162)   
Domains : Interpro (EBI)ADH_GroES-like    ADH_SF_Zn-type    GroES-like    NAD(P)-bd_dom    Quin_OxRdtase/zeta-crystal_CS   
Domain families : Pfam (Sanger)ADH_N (PF08240)   
Domain families : Pfam (NCBI)pfam08240   
Conserved Domain (NCBI)VAT1L
DMDM Disease mutations57687
Blocks (Seattle)VAT1L
PDB (SRS)4A27   
PDB (PDBSum)4A27   
PDB (IMB)4A27   
PDB (RSDB)4A27   
Structural Biology KnowledgeBase4A27   
SCOP (Structural Classification of Proteins)4A27   
CATH (Classification of proteins structures)4A27   
SuperfamilyQ9HCJ6
Human Protein AtlasENSG00000171724
Peptide AtlasQ9HCJ6
HPRD13875
IPIIPI00030578   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCJ6
IntAct (EBI)Q9HCJ6
FunCoupENSG00000171724
BioGRIDVAT1L
STRING (EMBL)VAT1L
ZODIACVAT1L
Ontologies - Pathways
QuickGOQ9HCJ6
Ontology : AmiGOprotein binding  zinc ion binding  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  zinc ion binding  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkVAT1L
Atlas of Cancer Signalling NetworkVAT1L
Wikipedia pathwaysVAT1L
Orthology - Evolution
OrthoDB57687
GeneTree (enSembl)ENSG00000171724
Phylogenetic Trees/Animal Genes : TreeFamVAT1L
HOVERGENQ9HCJ6
HOGENOMQ9HCJ6
Homologs : HomoloGeneVAT1L
Homology/Alignments : Family Browser (UCSC)VAT1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVAT1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAT1L
dbVarVAT1L
ClinVarVAT1L
1000_GenomesVAT1L 
Exome Variant ServerVAT1L
ExAC (Exome Aggregation Consortium)VAT1L (select the gene name)
Genetic variants : HAPMAP57687
Genomic Variants (DGV)VAT1L [DGVbeta]
DECIPHER (Syndromes)16:77822461-78014004  ENSG00000171724
CONAN: Copy Number AnalysisVAT1L 
Mutations
ICGC Data PortalVAT1L 
TCGA Data PortalVAT1L 
Broad Tumor PortalVAT1L
OASIS PortalVAT1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVAT1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVAT1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VAT1L
DgiDB (Drug Gene Interaction Database)VAT1L
DoCM (Curated mutations)VAT1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VAT1L (select a term)
intoGenVAT1L
Cancer3DVAT1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVAT1L
Genetic Testing Registry VAT1L
NextProtQ9HCJ6 [Medical]
TSGene57687
GENETestsVAT1L
Huge Navigator VAT1L [HugePedia]
snp3D : Map Gene to Disease57687
BioCentury BCIQVAT1L
ClinGenVAT1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57687
Chemical/Pharm GKB GenePA164727497
Clinical trialVAT1L
Miscellaneous
canSAR (ICR)VAT1L (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVAT1L
EVEXVAT1L
GoPubMedVAT1L
iHOPVAT1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:10 CET 2017

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