Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VAX1 (ventral anterior homeobox 1)

Identity

Other aliasMCOPS11
HGNC (Hugo) VAX1
LocusID (NCBI) 11023
Atlas_Id 56295
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 117133290 and ends at 117138301 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VAX1   12660
Cards
Entrez_Gene (NCBI)VAX1  11023  ventral anterior homeobox 1
AliasesMCOPS11
GeneCards (Weizmann)VAX1
Ensembl hg19 (Hinxton)ENSG00000148704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148704 [Gene_View]  chr10:117133290-117138301 [Contig_View]  VAX1 [Vega]
ICGC DataPortalENSG00000148704
TCGA cBioPortalVAX1
AceView (NCBI)VAX1
Genatlas (Paris)VAX1
WikiGenes11023
SOURCE (Princeton)VAX1
Genetics Home Reference (NIH)VAX1
Genomic and cartography
GoldenPath hg38 (UCSC)VAX1  -     chr10:117133290-117138301 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VAX1  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblVAX1 - 10q25.3 [CytoView hg19]  VAX1 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIVAX1 [Mapview hg19]  VAX1 [Mapview hg38]
OMIM604294   614402   
Gene and transcription
Genbank (Entrez)AK127095 BC101694 BC101696 EU446939
RefSeq transcript (Entrez)NM_001112704 NM_199131
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VAX1
Cluster EST : UnigeneHs.441536 [ NCBI ]
CGAP (NCI)Hs.441536
Alternative Splicing GalleryENSG00000148704
Gene ExpressionVAX1 [ NCBI-GEO ]   VAX1 [ EBI - ARRAY_EXPRESS ]   VAX1 [ SEEK ]   VAX1 [ MEM ]
Gene Expression Viewer (FireBrowse)VAX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11023
GTEX Portal (Tissue expression)VAX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SQQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SQQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SQQ9
Splice isoforms : SwissVarQ5SQQ9
PhosPhoSitePlusQ5SQQ9
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    HTH_motif    Vax1   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)VAX1
DMDM Disease mutations11023
Blocks (Seattle)VAX1
SuperfamilyQ5SQQ9
Human Protein AtlasENSG00000148704
Peptide AtlasQ5SQQ9
HPRD16052
IPIIPI00515064   IPI00749057   
Protein Interaction databases
DIP (DOE-UCLA)Q5SQQ9
IntAct (EBI)Q5SQQ9
FunCoupENSG00000148704
BioGRIDVAX1
STRING (EMBL)VAX1
ZODIACVAX1
Ontologies - Pathways
QuickGOQ5SQQ9
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  neuron migration  nucleus  transcription, DNA-templated  negative regulation of neuroblast proliferation  axon guidance  brain development  chromatin DNA binding  skeletal muscle cell differentiation  camera-type eye development  palate development  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  neuron migration  nucleus  transcription, DNA-templated  negative regulation of neuroblast proliferation  axon guidance  brain development  chromatin DNA binding  skeletal muscle cell differentiation  camera-type eye development  palate development  
NDEx NetworkVAX1
Atlas of Cancer Signalling NetworkVAX1
Wikipedia pathwaysVAX1
Orthology - Evolution
OrthoDB11023
GeneTree (enSembl)ENSG00000148704
Phylogenetic Trees/Animal Genes : TreeFamVAX1
HOVERGENQ5SQQ9
HOGENOMQ5SQQ9
Homologs : HomoloGeneVAX1
Homology/Alignments : Family Browser (UCSC)VAX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVAX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAX1
dbVarVAX1
ClinVarVAX1
1000_GenomesVAX1 
Exome Variant ServerVAX1
ExAC (Exome Aggregation Consortium)VAX1 (select the gene name)
Genetic variants : HAPMAP11023
Genomic Variants (DGV)VAX1 [DGVbeta]
DECIPHERVAX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVAX1 
Mutations
ICGC Data PortalVAX1 
TCGA Data PortalVAX1 
Broad Tumor PortalVAX1
OASIS PortalVAX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVAX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVAX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch VAX1
DgiDB (Drug Gene Interaction Database)VAX1
DoCM (Curated mutations)VAX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VAX1 (select a term)
intoGenVAX1
Cancer3DVAX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604294    614402   
Orphanet
MedgenVAX1
Genetic Testing Registry VAX1
NextProtQ5SQQ9 [Medical]
TSGene11023
GENETestsVAX1
Target ValidationVAX1
Huge Navigator VAX1 [HugePedia]
snp3D : Map Gene to Disease11023
BioCentury BCIQVAX1
ClinGenVAX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11023
Chemical/Pharm GKB GenePA37283
Clinical trialVAX1
Miscellaneous
canSAR (ICR)VAX1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVAX1
EVEXVAX1
GoPubMedVAX1
iHOPVAX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:25 CEST 2017

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