Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VAX2 (ventral anterior homeobox 2)

Identity

Alias_symbol (synonym)DRES93
Other alias
HGNC (Hugo) VAX2
LocusID (NCBI) 25806
Atlas_Id 75588
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 71127720 and ends at 71160575 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VAX2   12661
Cards
Entrez_Gene (NCBI)VAX2  25806  ventral anterior homeobox 2
AliasesDRES93
GeneCards (Weizmann)VAX2
Ensembl hg19 (Hinxton)ENSG00000116035 [Gene_View]  chr2:71127720-71160575 [Contig_View]  VAX2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116035 [Gene_View]  chr2:71127720-71160575 [Contig_View]  VAX2 [Vega]
ICGC DataPortalENSG00000116035
TCGA cBioPortalVAX2
AceView (NCBI)VAX2
Genatlas (Paris)VAX2
WikiGenes25806
SOURCE (Princeton)VAX2
Genetics Home Reference (NIH)VAX2
Genomic and cartography
GoldenPath hg19 (UCSC)VAX2  -     chr2:71127720-71160575 +  2p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VAX2  -     2p13.3   [Description]    (hg38-Dec_2013)
EnsemblVAX2 - 2p13.3 [CytoView hg19]  VAX2 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBIVAX2 [Mapview hg19]  VAX2 [Mapview hg38]
OMIM604295   
Gene and transcription
Genbank (Entrez)AB593145 BC006336 BT007035 Y17791
RefSeq transcript (Entrez)NM_012476
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_030009 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)VAX2
Cluster EST : UnigeneHs.249170 [ NCBI ]
CGAP (NCI)Hs.249170
Alternative Splicing GalleryENSG00000116035
Gene ExpressionVAX2 [ NCBI-GEO ]   VAX2 [ EBI - ARRAY_EXPRESS ]   VAX2 [ SEEK ]   VAX2 [ MEM ]
Gene Expression Viewer (FireBrowse)VAX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25806
GTEX Portal (Tissue expression)VAX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIW0
Splice isoforms : SwissVarQ9UIW0
PhosPhoSitePlusQ9UIW0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox_CS    Homeobox_dom    Homeobox_metazoa    Homeodomain-like    HTH_motif   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)VAX2
DMDM Disease mutations25806
Blocks (Seattle)VAX2
SuperfamilyQ9UIW0
Human Protein AtlasENSG00000116035
Peptide AtlasQ9UIW0
HPRD05051
IPIIPI00018903   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIW0
IntAct (EBI)Q9UIW0
FunCoupENSG00000116035
BioGRIDVAX2
STRING (EMBL)VAX2
ZODIACVAX2
Ontologies - Pathways
QuickGOQ9UIW0
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding transcription factor activity  nucleus  cytoplasm  transcription, DNA-templated  ectoderm development  axonogenesis  visual perception  dorsal/ventral axis specification  Wnt signaling pathway  forebrain development  chromatin DNA binding  sequence-specific DNA binding  embryonic eye morphogenesis  retina development in camera-type eye  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding transcription factor activity  nucleus  cytoplasm  transcription, DNA-templated  ectoderm development  axonogenesis  visual perception  dorsal/ventral axis specification  Wnt signaling pathway  forebrain development  chromatin DNA binding  sequence-specific DNA binding  embryonic eye morphogenesis  retina development in camera-type eye  
NDEx NetworkVAX2
Atlas of Cancer Signalling NetworkVAX2
Wikipedia pathwaysVAX2
Orthology - Evolution
OrthoDB25806
GeneTree (enSembl)ENSG00000116035
Phylogenetic Trees/Animal Genes : TreeFamVAX2
HOVERGENQ9UIW0
HOGENOMQ9UIW0
Homologs : HomoloGeneVAX2
Homology/Alignments : Family Browser (UCSC)VAX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVAX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VAX2
dbVarVAX2
ClinVarVAX2
1000_GenomesVAX2 
Exome Variant ServerVAX2
ExAC (Exome Aggregation Consortium)VAX2 (select the gene name)
Genetic variants : HAPMAP25806
Genomic Variants (DGV)VAX2 [DGVbeta]
DECIPHER (Syndromes)2:71127720-71160575  ENSG00000116035
CONAN: Copy Number AnalysisVAX2 
Mutations
ICGC Data PortalVAX2 
TCGA Data PortalVAX2 
Broad Tumor PortalVAX2
OASIS PortalVAX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVAX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVAX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch VAX2
DgiDB (Drug Gene Interaction Database)VAX2
DoCM (Curated mutations)VAX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VAX2 (select a term)
intoGenVAX2
Cancer3DVAX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604295   
Orphanet
MedgenVAX2
Genetic Testing Registry VAX2
NextProtQ9UIW0 [Medical]
TSGene25806
GENETestsVAX2
Huge Navigator VAX2 [HugePedia]
snp3D : Map Gene to Disease25806
BioCentury BCIQVAX2
ClinGenVAX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25806
Chemical/Pharm GKB GenePA37284
Clinical trialVAX2
Miscellaneous
canSAR (ICR)VAX2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVAX2
EVEXVAX2
GoPubMedVAX2
iHOPVAX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:10 CET 2017

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