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VBP1 (VHL binding protein 1)

Identity

Alias_namesvon Hippel-Lindau binding protein 1
Alias_symbol (synonym)PFD3
PFDN3
Other aliasHIBBJ46
VBP-1
HGNC (Hugo) VBP1
LocusID (NCBI) 7411
Atlas_Id 42783
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 155216424 and ends at 155239841 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MTM1 (Xq28) / VBP1 (Xq28)VBP1 (Xq28) / BRCC3 (Xq28)VBP1 (Xq28) / GABRA3 (Xq28)
VBP1 (Xq28) / VBP1 (Xq28)MTM1 Xq28 / VBP1 Xq28VBP1 Xq28 / BRCC3 Xq28
VBP1 Xq28 / GABRA3 Xq28

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VBP1   12662
Cards
Entrez_Gene (NCBI)VBP1  7411  VHL binding protein 1
AliasesHIBBJ46; PFD3; PFDN3; VBP-1
GeneCards (Weizmann)VBP1
Ensembl hg19 (Hinxton)ENSG00000155959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155959 [Gene_View]  ENSG00000155959 [Sequence]  chrX:155216424-155239841 [Contig_View]  VBP1 [Vega]
ICGC DataPortalENSG00000155959
TCGA cBioPortalVBP1
AceView (NCBI)VBP1
Genatlas (Paris)VBP1
WikiGenes7411
SOURCE (Princeton)VBP1
Genetics Home Reference (NIH)VBP1
Genomic and cartography
GoldenPath hg38 (UCSC)VBP1  -     chrX:155216424-155239841 +  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VBP1  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblVBP1 - 2p13.3 [CytoView hg19]  VBP1 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBIVBP1 [Mapview hg19]  VBP1 [Mapview hg38]
OMIM300133   
Gene and transcription
Genbank (Entrez)AA626259 AA781721 AK301646 AK313420 BC009570
RefSeq transcript (Entrez)NM_001303543 NM_001303544 NM_001303545 NM_003372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VBP1
Cluster EST : UnigeneHs.436803 [ NCBI ]
CGAP (NCI)Hs.436803
Alternative Splicing GalleryENSG00000155959
Gene ExpressionVBP1 [ NCBI-GEO ]   VBP1 [ EBI - ARRAY_EXPRESS ]   VBP1 [ SEEK ]   VBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)VBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7411
GTEX Portal (Tissue expression)VBP1
Human Protein AtlasENSG00000155959-VBP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61758   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61758  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61758
Splice isoforms : SwissVarP61758
PhosPhoSitePlusP61758
Domains : Interpro (EBI)PFD3    Prefoldin    Prefoldin_subunit_alpha   
Domain families : Pfam (Sanger)Prefoldin (PF02996)   
Domain families : Pfam (NCBI)pfam02996   
Conserved Domain (NCBI)VBP1
DMDM Disease mutations7411
Blocks (Seattle)VBP1
SuperfamilyP61758
Human Protein Atlas [tissue]ENSG00000155959-VBP1 [tissue]
Peptide AtlasP61758
HPRD02135
IPIIPI00334159   IPI01013843   
Protein Interaction databases
DIP (DOE-UCLA)P61758
IntAct (EBI)P61758
FunCoupENSG00000155959
BioGRIDVBP1
STRING (EMBL)VBP1
ZODIACVBP1
Ontologies - Pathways
QuickGOP61758
Ontology : AmiGOprotein binding  nucleus  cytoplasm  cytosol  polysome  protein folding  microtubule-based process  tubulin complex assembly  tubulin binding  prefoldin complex  intracellular membrane-bounded organelle  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  cytosol  polysome  protein folding  microtubule-based process  tubulin complex assembly  tubulin binding  prefoldin complex  intracellular membrane-bounded organelle  
NDEx NetworkVBP1
Atlas of Cancer Signalling NetworkVBP1
Wikipedia pathwaysVBP1
Orthology - Evolution
OrthoDB7411
GeneTree (enSembl)ENSG00000155959
Phylogenetic Trees/Animal Genes : TreeFamVBP1
HOVERGENP61758
HOGENOMP61758
Homologs : HomoloGeneVBP1
Homology/Alignments : Family Browser (UCSC)VBP1
Gene fusions - Rearrangements
Fusion PortalMTM1 Xq28 VBP1 Xq28 LUAD
Fusion PortalVBP1 Xq28 BRCC3 Xq28 BRCA
Fusion PortalVBP1 Xq28 GABRA3 Xq28 LUAD
Fusion : QuiverVBP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VBP1
dbVarVBP1
ClinVarVBP1
1000_GenomesVBP1 
Exome Variant ServerVBP1
ExAC (Exome Aggregation Consortium)ENSG00000155959
GNOMAD BrowserENSG00000155959
Varsome BrowserVBP1
Genetic variants : HAPMAP7411
Genomic Variants (DGV)VBP1 [DGVbeta]
DECIPHERVBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVBP1 
Mutations
ICGC Data PortalVBP1 
TCGA Data PortalVBP1 
Broad Tumor PortalVBP1
OASIS PortalVBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch VBP1
DgiDB (Drug Gene Interaction Database)VBP1
DoCM (Curated mutations)VBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VBP1 (select a term)
intoGenVBP1
Cancer3DVBP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300133   
Orphanet
DisGeNETVBP1
MedgenVBP1
Genetic Testing Registry VBP1
NextProtP61758 [Medical]
TSGene7411
GENETestsVBP1
Target ValidationVBP1
Huge Navigator VBP1 [HugePedia]
snp3D : Map Gene to Disease7411
BioCentury BCIQVBP1
ClinGenVBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7411
Chemical/Pharm GKB GenePA37285
Clinical trialVBP1
Miscellaneous
canSAR (ICR)VBP1 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVBP1
EVEXVBP1
GoPubMedVBP1
iHOPVBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Aug 16 11:41:06 CEST 2018

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