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VCPIP1 (valosin containing protein interacting protein 1)

Identity

Alias_namesvalosin containing protein (p97)/p47 complex interacting protein 1
Alias_symbol (synonym)VCIP135
KIAA1850
FLJ23132
DUBA3
Other alias
HGNC (Hugo) VCPIP1
LocusID (NCBI) 80124
Atlas_Id 56520
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66630253 and ends at 66667217 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
H19 (11p15.5) / VCPIP1 (8q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VCPIP1   30897
Cards
Entrez_Gene (NCBI)VCPIP1  80124  valosin containing protein interacting protein 1
AliasesDUBA3; VCIP135
GeneCards (Weizmann)VCPIP1
Ensembl hg19 (Hinxton)ENSG00000175073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175073 [Gene_View]  chr8:66630253-66667217 [Contig_View]  VCPIP1 [Vega]
ICGC DataPortalENSG00000175073
TCGA cBioPortalVCPIP1
AceView (NCBI)VCPIP1
Genatlas (Paris)VCPIP1
WikiGenes80124
SOURCE (Princeton)VCPIP1
Genetics Home Reference (NIH)VCPIP1
Genomic and cartography
GoldenPath hg38 (UCSC)VCPIP1  -     chr8:66630253-66667217 -  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VCPIP1  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblVCPIP1 - 8q13.1 [CytoView hg19]  VCPIP1 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBIVCPIP1 [Mapview hg19]  VCPIP1 [Mapview hg38]
OMIM611745   
Gene and transcription
Genbank (Entrez)AB058753 AK026785 AK225580 AK297345 AL832606
RefSeq transcript (Entrez)NM_025054
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VCPIP1
Cluster EST : UnigeneHs.632066 [ NCBI ]
CGAP (NCI)Hs.632066
Alternative Splicing GalleryENSG00000175073
Gene ExpressionVCPIP1 [ NCBI-GEO ]   VCPIP1 [ EBI - ARRAY_EXPRESS ]   VCPIP1 [ SEEK ]   VCPIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)VCPIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80124
GTEX Portal (Tissue expression)VCPIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JH7
Splice isoforms : SwissVarQ96JH7
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ96JH7
Domaine pattern : Prosite (Expaxy)OTU (PS50802)   
Domains : Interpro (EBI)OTU_dom    Ubiquitin-rel_dom   
Domain families : Pfam (Sanger)OTU (PF02338)   
Domain families : Pfam (NCBI)pfam02338   
Conserved Domain (NCBI)VCPIP1
DMDM Disease mutations80124
Blocks (Seattle)VCPIP1
SuperfamilyQ96JH7
Human Protein AtlasENSG00000175073
Peptide AtlasQ96JH7
HPRD15645
IPIIPI00064162   
Protein Interaction databases
DIP (DOE-UCLA)Q96JH7
IntAct (EBI)Q96JH7
FunCoupENSG00000175073
BioGRIDVCPIP1
STRING (EMBL)VCPIP1
ZODIACVCPIP1
Ontologies - Pathways
QuickGOQ96JH7
Ontology : AmiGOmitotic cell cycle  thiol-dependent ubiquitin-specific protease activity  thiol-dependent ubiquitin-specific protease activity  cytoplasm  endoplasmic reticulum  Golgi stack  endoplasmic reticulum membrane fusion  protein ubiquitination  protein K11-linked deubiquitination  protein K48-linked deubiquitination  Golgi reassembly  
Ontology : EGO-EBImitotic cell cycle  thiol-dependent ubiquitin-specific protease activity  thiol-dependent ubiquitin-specific protease activity  cytoplasm  endoplasmic reticulum  Golgi stack  endoplasmic reticulum membrane fusion  protein ubiquitination  protein K11-linked deubiquitination  protein K48-linked deubiquitination  Golgi reassembly  
NDEx NetworkVCPIP1
Atlas of Cancer Signalling NetworkVCPIP1
Wikipedia pathwaysVCPIP1
Orthology - Evolution
OrthoDB80124
GeneTree (enSembl)ENSG00000175073
Phylogenetic Trees/Animal Genes : TreeFamVCPIP1
HOVERGENQ96JH7
HOGENOMQ96JH7
Homologs : HomoloGeneVCPIP1
Homology/Alignments : Family Browser (UCSC)VCPIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVCPIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VCPIP1
dbVarVCPIP1
ClinVarVCPIP1
1000_GenomesVCPIP1 
Exome Variant ServerVCPIP1
ExAC (Exome Aggregation Consortium)VCPIP1 (select the gene name)
Genetic variants : HAPMAP80124
Genomic Variants (DGV)VCPIP1 [DGVbeta]
DECIPHERVCPIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVCPIP1 
Mutations
ICGC Data PortalVCPIP1 
TCGA Data PortalVCPIP1 
Broad Tumor PortalVCPIP1
OASIS PortalVCPIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVCPIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVCPIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VCPIP1
DgiDB (Drug Gene Interaction Database)VCPIP1
DoCM (Curated mutations)VCPIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VCPIP1 (select a term)
intoGenVCPIP1
Cancer3DVCPIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611745   
Orphanet
MedgenVCPIP1
Genetic Testing Registry VCPIP1
NextProtQ96JH7 [Medical]
TSGene80124
GENETestsVCPIP1
Target ValidationVCPIP1
Huge Navigator VCPIP1 [HugePedia]
snp3D : Map Gene to Disease80124
BioCentury BCIQVCPIP1
ClinGenVCPIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80124
Chemical/Pharm GKB GenePA142670629
Clinical trialVCPIP1
Miscellaneous
canSAR (ICR)VCPIP1 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVCPIP1
EVEXVCPIP1
GoPubMedVCPIP1
iHOPVCPIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:37:54 CEST 2017

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