Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VCX (variable charge, X-linked)

Identity

Alias_namesvariable charge, X chromosome
Alias_symbol (synonym)VCX1
VCX10R
VCX-10r
VCX-B1
Other aliasVCXB1
HGNC (Hugo) VCX
LocusID (NCBI) 26609
Atlas_Id 75591
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 7842262 and ends at 7844143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VCX   12667
Cards
Entrez_Gene (NCBI)VCX  26609  variable charge, X-linked
AliasesVCX-10r; VCX-B1; VCX1; VCX10R; 
VCXB1
GeneCards (Weizmann)VCX
Ensembl hg19 (Hinxton)ENSG00000182583 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182583 [Gene_View]  chrX:7842262-7844143 [Contig_View]  VCX [Vega]
ICGC DataPortalENSG00000182583
TCGA cBioPortalVCX
AceView (NCBI)VCX
Genatlas (Paris)VCX
WikiGenes26609
SOURCE (Princeton)VCX
Genetics Home Reference (NIH)VCX
Genomic and cartography
GoldenPath hg38 (UCSC)VCX  -     chrX:7842262-7844143 +  Xp22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VCX  -     Xp22.31   [Description]    (hg19-Feb_2009)
EnsemblVCX - Xp22.31 [CytoView hg19]  VCX - Xp22.31 [CytoView hg38]
Mapping of homologs : NCBIVCX [Mapview hg19]  VCX [Mapview hg38]
OMIM300229   
Gene and transcription
Genbank (Entrez)AF159129 AF167081 BC098123 BC098149 BC126903
RefSeq transcript (Entrez)NM_013452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VCX
Cluster EST : UnigeneHs.567503 [ NCBI ]
CGAP (NCI)Hs.567503
Alternative Splicing GalleryENSG00000182583
Gene ExpressionVCX [ NCBI-GEO ]   VCX [ EBI - ARRAY_EXPRESS ]   VCX [ SEEK ]   VCX [ MEM ]
Gene Expression Viewer (FireBrowse)VCX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26609
GTEX Portal (Tissue expression)VCX
Human Protein AtlasENSG00000182583-VCX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H320   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H320  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H320
Splice isoforms : SwissVarQ9H320
PhosPhoSitePlusQ9H320
Domains : Interpro (EBI)VCX/VCY1   
Domain families : Pfam (Sanger)VCX_VCY (PF15231)   
Domain families : Pfam (NCBI)pfam15231   
Conserved Domain (NCBI)VCX
DMDM Disease mutations26609
Blocks (Seattle)VCX
SuperfamilyQ9H320
Human Protein Atlas [tissue]ENSG00000182583-VCX [tissue]
Peptide AtlasQ9H320
HPRD02206
IPIIPI00301071   IPI00941176   IPI01010685   
Protein Interaction databases
DIP (DOE-UCLA)Q9H320
IntAct (EBI)Q9H320
FunCoupENSG00000182583
BioGRIDVCX
STRING (EMBL)VCX
ZODIACVCX
Ontologies - Pathways
QuickGOQ9H320
Ontology : AmiGOchromatin binding  nucleus  nucleolus  chromatin organization  spermatogenesis  brain development  ribosome assembly  
Ontology : EGO-EBIchromatin binding  nucleus  nucleolus  chromatin organization  spermatogenesis  brain development  ribosome assembly  
NDEx NetworkVCX
Atlas of Cancer Signalling NetworkVCX
Wikipedia pathwaysVCX
Orthology - Evolution
OrthoDB26609
GeneTree (enSembl)ENSG00000182583
Phylogenetic Trees/Animal Genes : TreeFamVCX
HOVERGENQ9H320
HOGENOMQ9H320
Homologs : HomoloGeneVCX
Homology/Alignments : Family Browser (UCSC)VCX
Gene fusions - Rearrangements
Fusion: Tumor Portal VCX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVCX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VCX
dbVarVCX
ClinVarVCX
1000_GenomesVCX 
Exome Variant ServerVCX
ExAC (Exome Aggregation Consortium)ENSG00000182583
GNOMAD BrowserENSG00000182583
Genetic variants : HAPMAP26609
Genomic Variants (DGV)VCX [DGVbeta]
DECIPHERVCX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVCX 
Mutations
ICGC Data PortalVCX 
TCGA Data PortalVCX 
Broad Tumor PortalVCX
OASIS PortalVCX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVCX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVCX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VCX
DgiDB (Drug Gene Interaction Database)VCX
DoCM (Curated mutations)VCX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VCX (select a term)
intoGenVCX
Cancer3DVCX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300229   
Orphanet
MedgenVCX
Genetic Testing Registry VCX
NextProtQ9H320 [Medical]
TSGene26609
GENETestsVCX
Target ValidationVCX
Huge Navigator VCX [HugePedia]
snp3D : Map Gene to Disease26609
BioCentury BCIQVCX
ClinGenVCX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26609
Chemical/Pharm GKB GenePA37290
Clinical trialVCX
Miscellaneous
canSAR (ICR)VCX (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVCX
EVEXVCX
GoPubMedVCX
iHOPVCX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:35:21 CET 2017

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