Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VCX2 (variable charge, X-linked 2)

Identity

Alias_symbol (synonym)VCX-2r
VCX-2R
Other aliasVCX2R
VCXB
HGNC (Hugo) VCX2
LocusID (NCBI) 51480
Atlas_Id 75592
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 8169944 and ends at 8171267 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VCX3A (Xp22.31) / VCX2 (Xp22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VCX2   18158
Cards
Entrez_Gene (NCBI)VCX2  51480  variable charge, X-linked 2
AliasesVCX-2r; VCX2R; VCXB
GeneCards (Weizmann)VCX2
Ensembl hg19 (Hinxton)ENSG00000177504 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177504 [Gene_View]  chrX:8169944-8171267 [Contig_View]  VCX2 [Vega]
ICGC DataPortalENSG00000177504
TCGA cBioPortalVCX2
AceView (NCBI)VCX2
Genatlas (Paris)VCX2
WikiGenes51480
SOURCE (Princeton)VCX2
Genetics Home Reference (NIH)VCX2
Genomic and cartography
GoldenPath hg38 (UCSC)VCX2  -     chrX:8169944-8171267 -  Xp22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VCX2  -     Xp22.31   [Description]    (hg19-Feb_2009)
EnsemblVCX2 - Xp22.31 [CytoView hg19]  VCX2 - Xp22.31 [CytoView hg38]
Mapping of homologs : NCBIVCX2 [Mapview hg19]  VCX2 [Mapview hg38]
OMIM300532   
Gene and transcription
Genbank (Entrez)AF159127 AF167079 AI015625 AU099954 BC096715
RefSeq transcript (Entrez)NM_016378
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VCX2
Cluster EST : UnigeneHs.279737 [ NCBI ]
CGAP (NCI)Hs.279737
Alternative Splicing GalleryENSG00000177504
Gene ExpressionVCX2 [ NCBI-GEO ]   VCX2 [ EBI - ARRAY_EXPRESS ]   VCX2 [ SEEK ]   VCX2 [ MEM ]
Gene Expression Viewer (FireBrowse)VCX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51480
GTEX Portal (Tissue expression)VCX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H322   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H322  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H322
Splice isoforms : SwissVarQ9H322
PhosPhoSitePlusQ9H322
Domains : Interpro (EBI)VCX/VCY1   
Domain families : Pfam (Sanger)VCX_VCY (PF15231)   
Domain families : Pfam (NCBI)pfam15231   
Conserved Domain (NCBI)VCX2
DMDM Disease mutations51480
Blocks (Seattle)VCX2
SuperfamilyQ9H322
Human Protein AtlasENSG00000177504
Peptide AtlasQ9H322
HPRD06749
IPIIPI00301073   IPI00940579   
Protein Interaction databases
DIP (DOE-UCLA)Q9H322
IntAct (EBI)Q9H322
FunCoupENSG00000177504
BioGRIDVCX2
STRING (EMBL)VCX2
ZODIACVCX2
Ontologies - Pathways
QuickGOQ9H322
Ontology : AmiGOmolecular_function  cellular_component  brain development  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  brain development  biological_process  
NDEx NetworkVCX2
Atlas of Cancer Signalling NetworkVCX2
Wikipedia pathwaysVCX2
Orthology - Evolution
OrthoDB51480
GeneTree (enSembl)ENSG00000177504
Phylogenetic Trees/Animal Genes : TreeFamVCX2
HOVERGENQ9H322
HOGENOMQ9H322
Homologs : HomoloGeneVCX2
Homology/Alignments : Family Browser (UCSC)VCX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVCX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VCX2
dbVarVCX2
ClinVarVCX2
1000_GenomesVCX2 
Exome Variant ServerVCX2
ExAC (Exome Aggregation Consortium)VCX2 (select the gene name)
Genetic variants : HAPMAP51480
Genomic Variants (DGV)VCX2 [DGVbeta]
DECIPHERVCX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVCX2 
Mutations
ICGC Data PortalVCX2 
TCGA Data PortalVCX2 
Broad Tumor PortalVCX2
OASIS PortalVCX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVCX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVCX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VCX2
DgiDB (Drug Gene Interaction Database)VCX2
DoCM (Curated mutations)VCX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VCX2 (select a term)
intoGenVCX2
Cancer3DVCX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300532   
Orphanet
MedgenVCX2
Genetic Testing Registry VCX2
NextProtQ9H322 [Medical]
TSGene51480
GENETestsVCX2
Huge Navigator VCX2 [HugePedia]
snp3D : Map Gene to Disease51480
BioCentury BCIQVCX2
ClinGenVCX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51480
Chemical/Pharm GKB GenePA134891971
Clinical trialVCX2
Miscellaneous
canSAR (ICR)VCX2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVCX2
EVEXVCX2
GoPubMedVCX2
iHOPVCX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:01:07 CEST 2017

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