Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VCX3A (variable charge, X-linked 3A)

Identity

Alias_namesVCX3
variable charge, X-linked 3
Alias_symbol (synonym)VCX-8r
VCX-8R
VCX-A
Other aliasVCX8R
VCXA
HGNC (Hugo) VCX3A
LocusID (NCBI) 51481
Atlas_Id 75593
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 6451659 and ends at 6453159 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VCX3A (Xp22.31) / VCX2 (Xp22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VCX3A   18159
Cards
Entrez_Gene (NCBI)VCX3A  51481  variable charge, X-linked 3A
AliasesVCX-8r; VCX-A; VCX3; VCX8R; 
VCXA
GeneCards (Weizmann)VCX3A
Ensembl hg19 (Hinxton)ENSG00000169059 [Gene_View]  chrX:6451659-6453159 [Contig_View]  VCX3A [Vega]
Ensembl hg38 (Hinxton)ENSG00000169059 [Gene_View]  chrX:6451659-6453159 [Contig_View]  VCX3A [Vega]
ICGC DataPortalENSG00000169059
TCGA cBioPortalVCX3A
AceView (NCBI)VCX3A
Genatlas (Paris)VCX3A
WikiGenes51481
SOURCE (Princeton)VCX3A
Genetics Home Reference (NIH)VCX3A
Genomic and cartography
GoldenPath hg19 (UCSC)VCX3A  -     chrX:6451659-6453159 -  Xp22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VCX3A  -     Xp22.31   [Description]    (hg38-Dec_2013)
EnsemblVCX3A - Xp22.31 [CytoView hg19]  VCX3A - Xp22.31 [CytoView hg38]
Mapping of homologs : NCBIVCX3A [Mapview hg19]  VCX3A [Mapview hg38]
OMIM300533   
Gene and transcription
Genbank (Entrez)AF159128 AF167078 AM393418 BC039722 BC098149
RefSeq transcript (Entrez)NM_016379
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_011539 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)VCX3A
Cluster EST : UnigeneHs.278906 [ NCBI ]
CGAP (NCI)Hs.278906
Alternative Splicing GalleryENSG00000169059
Gene ExpressionVCX3A [ NCBI-GEO ]   VCX3A [ EBI - ARRAY_EXPRESS ]   VCX3A [ SEEK ]   VCX3A [ MEM ]
Gene Expression Viewer (FireBrowse)VCX3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51481
GTEX Portal (Tissue expression)VCX3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NNX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NNX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NNX9
Splice isoforms : SwissVarQ9NNX9
PhosPhoSitePlusQ9NNX9
Domains : Interpro (EBI)VCX/VCY1   
Domain families : Pfam (Sanger)VCX_VCY (PF15231)   
Domain families : Pfam (NCBI)pfam15231   
Conserved Domain (NCBI)VCX3A
DMDM Disease mutations51481
Blocks (Seattle)VCX3A
SuperfamilyQ9NNX9
Human Protein AtlasENSG00000169059
Peptide AtlasQ9NNX9
HPRD18280
IPIIPI00292843   IPI00787485   IPI01013612   
Protein Interaction databases
DIP (DOE-UCLA)Q9NNX9
IntAct (EBI)Q9NNX9
FunCoupENSG00000169059
BioGRIDVCX3A
STRING (EMBL)VCX3A
ZODIACVCX3A
Ontologies - Pathways
QuickGOQ9NNX9
Ontology : AmiGOnucleus  nucleolus  brain development  
Ontology : EGO-EBInucleus  nucleolus  brain development  
NDEx NetworkVCX3A
Atlas of Cancer Signalling NetworkVCX3A
Wikipedia pathwaysVCX3A
Orthology - Evolution
OrthoDB51481
GeneTree (enSembl)ENSG00000169059
Phylogenetic Trees/Animal Genes : TreeFamVCX3A
HOVERGENQ9NNX9
HOGENOMQ9NNX9
Homologs : HomoloGeneVCX3A
Homology/Alignments : Family Browser (UCSC)VCX3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVCX3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VCX3A
dbVarVCX3A
ClinVarVCX3A
1000_GenomesVCX3A 
Exome Variant ServerVCX3A
ExAC (Exome Aggregation Consortium)VCX3A (select the gene name)
Genetic variants : HAPMAP51481
Genomic Variants (DGV)VCX3A [DGVbeta]
DECIPHER (Syndromes)X:6451659-6453159  ENSG00000169059
CONAN: Copy Number AnalysisVCX3A 
Mutations
ICGC Data PortalVCX3A 
TCGA Data PortalVCX3A 
Broad Tumor PortalVCX3A
OASIS PortalVCX3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVCX3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVCX3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VCX3A
DgiDB (Drug Gene Interaction Database)VCX3A
DoCM (Curated mutations)VCX3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VCX3A (select a term)
intoGenVCX3A
Cancer3DVCX3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300533   
Orphanet
MedgenVCX3A
Genetic Testing Registry VCX3A
NextProtQ9NNX9 [Medical]
TSGene51481
GENETestsVCX3A
Huge Navigator VCX3A [HugePedia]
snp3D : Map Gene to Disease51481
BioCentury BCIQVCX3A
ClinGenVCX3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51481
Chemical/Pharm GKB GenePA134936169
Clinical trialVCX3A
Miscellaneous
canSAR (ICR)VCX3A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVCX3A
EVEXVCX3A
GoPubMedVCX3A
iHOPVCX3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:11 CET 2017

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