Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VCX3B (variable charge, X-linked 3B)

Identity

Alias_symbol (synonym)VCX-C
Other aliasVCXC
HGNC (Hugo) VCX3B
LocusID (NCBI) 425054
Atlas_Id 75594
Location Xp22.31  [Link to chromosome band Xp22]
Location_base_pair Starts at 8432871 and ends at 8434551 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VCX3B   31838
Cards
Entrez_Gene (NCBI)VCX3B  425054  variable charge, X-linked 3B
AliasesVCX-C; VCXC
GeneCards (Weizmann)VCX3B
Ensembl hg19 (Hinxton)ENSG00000205642 [Gene_View]  chrX:8432871-8434551 [Contig_View]  VCX3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000205642 [Gene_View]  chrX:8432871-8434551 [Contig_View]  VCX3B [Vega]
ICGC DataPortalENSG00000205642
TCGA cBioPortalVCX3B
AceView (NCBI)VCX3B
Genatlas (Paris)VCX3B
WikiGenes425054
SOURCE (Princeton)VCX3B
Genetics Home Reference (NIH)VCX3B
Genomic and cartography
GoldenPath hg19 (UCSC)VCX3B  -     chrX:8432871-8434551 +  Xp22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VCX3B  -     Xp22.31   [Description]    (hg38-Dec_2013)
EnsemblVCX3B - Xp22.31 [CytoView hg19]  VCX3B - Xp22.31 [CytoView hg38]
Mapping of homologs : NCBIVCX3B [Mapview hg19]  VCX3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA883225 AF167080 BC098143
RefSeq transcript (Entrez)NM_001001888
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)VCX3B
Cluster EST : UnigeneHs.534814 [ NCBI ]
CGAP (NCI)Hs.534814
Alternative Splicing GalleryENSG00000205642
Gene ExpressionVCX3B [ NCBI-GEO ]   VCX3B [ EBI - ARRAY_EXPRESS ]   VCX3B [ SEEK ]   VCX3B [ MEM ]
Gene Expression Viewer (FireBrowse)VCX3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)425054
GTEX Portal (Tissue expression)VCX3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H321   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H321  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H321
Splice isoforms : SwissVarQ9H321
PhosPhoSitePlusQ9H321
Domains : Interpro (EBI)VCX/VCY1   
Domain families : Pfam (Sanger)VCX_VCY (PF15231)   
Domain families : Pfam (NCBI)pfam15231   
Conserved Domain (NCBI)VCX3B
DMDM Disease mutations425054
Blocks (Seattle)VCX3B
SuperfamilyQ9H321
Human Protein AtlasENSG00000205642
Peptide AtlasQ9H321
HPRD15646
IPIIPI00385888   IPI00654586   IPI00939615   IPI01022646   IPI00645280   
Protein Interaction databases
DIP (DOE-UCLA)Q9H321
IntAct (EBI)Q9H321
FunCoupENSG00000205642
BioGRIDVCX3B
STRING (EMBL)VCX3B
ZODIACVCX3B
Ontologies - Pathways
QuickGOQ9H321
Ontology : AmiGOnucleus  nucleolus  
Ontology : EGO-EBInucleus  nucleolus  
NDEx NetworkVCX3B
Atlas of Cancer Signalling NetworkVCX3B
Wikipedia pathwaysVCX3B
Orthology - Evolution
OrthoDB425054
GeneTree (enSembl)ENSG00000205642
Phylogenetic Trees/Animal Genes : TreeFamVCX3B
HOVERGENQ9H321
HOGENOMQ9H321
Homologs : HomoloGeneVCX3B
Homology/Alignments : Family Browser (UCSC)VCX3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVCX3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VCX3B
dbVarVCX3B
ClinVarVCX3B
1000_GenomesVCX3B 
Exome Variant ServerVCX3B
ExAC (Exome Aggregation Consortium)VCX3B (select the gene name)
Genetic variants : HAPMAP425054
Genomic Variants (DGV)VCX3B [DGVbeta]
DECIPHER (Syndromes)X:8432871-8434551  ENSG00000205642
CONAN: Copy Number AnalysisVCX3B 
Mutations
ICGC Data PortalVCX3B 
TCGA Data PortalVCX3B 
Broad Tumor PortalVCX3B
OASIS PortalVCX3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVCX3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVCX3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VCX3B
DgiDB (Drug Gene Interaction Database)VCX3B
DoCM (Curated mutations)VCX3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VCX3B (select a term)
intoGenVCX3B
Cancer3DVCX3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVCX3B
Genetic Testing Registry VCX3B
NextProtQ9H321 [Medical]
TSGene425054
GENETestsVCX3B
Huge Navigator VCX3B [HugePedia]
snp3D : Map Gene to Disease425054
BioCentury BCIQVCX3B
ClinGenVCX3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD425054
Chemical/Pharm GKB GenePA134866686
Clinical trialVCX3B
Miscellaneous
canSAR (ICR)VCX3B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVCX3B
EVEXVCX3B
GoPubMedVCX3B
iHOPVCX3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:11 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.