Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VCY (variable charge, Y-linked)

Identity

Alias_namesvariable charge, Y chromosome
Alias_symbol (synonym)BPY1
VCY1A
VCY1
Other alias
HGNC (Hugo) VCY
LocusID (NCBI) 9084
Atlas_Id 75595
Location Yq11.221  [Link to chromosome band Yq11]
Location_base_pair Starts at 13985772 and ends at 13986512 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VCY   12668
Cards
Entrez_Gene (NCBI)VCY  9084  variable charge, Y-linked
AliasesBPY1; VCY1; VCY1A
GeneCards (Weizmann)VCY
Ensembl hg19 (Hinxton)ENSG00000129864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129864 [Gene_View]  chrY:13985772-13986512 [Contig_View]  VCY [Vega]
ICGC DataPortalENSG00000129864
TCGA cBioPortalVCY
AceView (NCBI)VCY
Genatlas (Paris)VCY
WikiGenes9084
SOURCE (Princeton)VCY
Genetics Home Reference (NIH)VCY
Genomic and cartography
GoldenPath hg38 (UCSC)VCY  -     chrY:13985772-13986512 -  Yq11.221   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VCY  -     Yq11.221   [Description]    (hg19-Feb_2009)
EnsemblVCY - Yq11.221 [CytoView hg19]  VCY - Yq11.221 [CytoView hg38]
Mapping of homologs : NCBIVCY [Mapview hg19]  VCY [Mapview hg38]
OMIM400012   415000   
Gene and transcription
Genbank (Entrez)AF000979 AI149997 BC096729
RefSeq transcript (Entrez)NM_004679
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VCY
Cluster EST : UnigeneHs.632284 [ NCBI ]
CGAP (NCI)Hs.632284
Alternative Splicing GalleryENSG00000129864
Gene ExpressionVCY [ NCBI-GEO ]   VCY [ EBI - ARRAY_EXPRESS ]   VCY [ SEEK ]   VCY [ MEM ]
Gene Expression Viewer (FireBrowse)VCY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9084
GTEX Portal (Tissue expression)VCY
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14598   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14598  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14598
Splice isoforms : SwissVarO14598
PhosPhoSitePlusO14598
Domains : Interpro (EBI)VCX/VCY1   
Domain families : Pfam (Sanger)VCX_VCY (PF15231)   
Domain families : Pfam (NCBI)pfam15231   
Conserved Domain (NCBI)VCY
DMDM Disease mutations9084
Blocks (Seattle)VCY
SuperfamilyO14598
Human Protein AtlasENSG00000129864
Peptide AtlasO14598
HPRD02453
Protein Interaction databases
DIP (DOE-UCLA)O14598
IntAct (EBI)O14598
FunCoupENSG00000129864
BioGRIDVCY
STRING (EMBL)VCY
ZODIACVCY
Ontologies - Pathways
QuickGOO14598
Ontology : AmiGObrain development  
Ontology : EGO-EBIbrain development  
NDEx NetworkVCY
Atlas of Cancer Signalling NetworkVCY
Wikipedia pathwaysVCY
Orthology - Evolution
OrthoDB9084
GeneTree (enSembl)ENSG00000129864
Phylogenetic Trees/Animal Genes : TreeFamVCY
HOVERGENO14598
HOGENOMO14598
Homologs : HomoloGeneVCY
Homology/Alignments : Family Browser (UCSC)VCY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVCY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VCY
dbVarVCY
ClinVarVCY
1000_GenomesVCY 
Exome Variant ServerVCY
ExAC (Exome Aggregation Consortium)VCY (select the gene name)
Genetic variants : HAPMAP9084
Genomic Variants (DGV)VCY [DGVbeta]
DECIPHERVCY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVCY 
Mutations
ICGC Data PortalVCY 
TCGA Data PortalVCY 
Broad Tumor PortalVCY
OASIS PortalVCY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVCY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVCY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VCY
DgiDB (Drug Gene Interaction Database)VCY
DoCM (Curated mutations)VCY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VCY (select a term)
intoGenVCY
Cancer3DVCY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400012    415000   
Orphanet
MedgenVCY
Genetic Testing Registry VCY
NextProtO14598 [Medical]
TSGene9084
GENETestsVCY
Target ValidationVCY
Huge Navigator VCY [HugePedia]
snp3D : Map Gene to Disease9084
BioCentury BCIQVCY
ClinGenVCY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9084
Chemical/Pharm GKB GenePA37291
Clinical trialVCY
Miscellaneous
canSAR (ICR)VCY (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVCY
EVEXVCY
GoPubMedVCY
iHOPVCY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:48:33 CEST 2017

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