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VCY1B (variable charge, Y-linked 1B)

Identity

Alias_symbol (synonym)BPY1B
Other alias
HGNC (Hugo) VCY1B
LocusID (NCBI) 353513
Atlas_Id 75596
Location Yq11.221  [Link to chromosome band Yq11]
Location_base_pair Starts at 16168102 and ends at 16168838 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VCY1B   31751
Cards
Entrez_Gene (NCBI)VCY1B  353513  variable charge, Y-linked 1B
AliasesBPY1B
GeneCards (Weizmann)VCY1B
Ensembl hg19 (Hinxton)ENSG00000129862 [Gene_View]  chrY:16168102-16168838 [Contig_View]  VCY1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000129862 [Gene_View]  chrY:16168102-16168838 [Contig_View]  VCY1B [Vega]
ICGC DataPortalENSG00000129862
TCGA cBioPortalVCY1B
AceView (NCBI)VCY1B
Genatlas (Paris)VCY1B
WikiGenes353513
SOURCE (Princeton)VCY1B
Genetics Home Reference (NIH)VCY1B
Genomic and cartography
GoldenPath hg19 (UCSC)VCY1B  -     chrY:16168102-16168838 +  Yq11.221   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VCY1B  -     Yq11.221   [Description]    (hg38-Dec_2013)
EnsemblVCY1B - Yq11.221 [CytoView hg19]  VCY1B - Yq11.221 [CytoView hg38]
Mapping of homologs : NCBIVCY1B [Mapview hg19]  VCY1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC056508 HQ447627
RefSeq transcript (Entrez)NM_181880
RefSeq genomic (Entrez)NC_000024 NT_011875
Consensus coding sequences : CCDS (NCBI)VCY1B
Cluster EST : UnigeneHs.170076 [ NCBI ]
CGAP (NCI)Hs.170076
Alternative Splicing GalleryENSG00000129862
Gene ExpressionVCY1B [ NCBI-GEO ]   VCY1B [ EBI - ARRAY_EXPRESS ]   VCY1B [ SEEK ]   VCY1B [ MEM ]
Gene Expression Viewer (FireBrowse)VCY1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353513
GTEX Portal (Tissue expression)VCY1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14598   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14598  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14598
Splice isoforms : SwissVarO14598
PhosPhoSitePlusO14598
Domains : Interpro (EBI)VCX/VCY1   
Domain families : Pfam (Sanger)VCX_VCY (PF15231)   
Domain families : Pfam (NCBI)pfam15231   
Conserved Domain (NCBI)VCY1B
DMDM Disease mutations353513
Blocks (Seattle)VCY1B
SuperfamilyO14598
Human Protein AtlasENSG00000129862
Peptide AtlasO14598
HPRD18602
IPIIPI00297427   
Protein Interaction databases
DIP (DOE-UCLA)O14598
IntAct (EBI)O14598
FunCoupENSG00000129862
BioGRIDVCY1B
STRING (EMBL)VCY1B
ZODIACVCY1B
Ontologies - Pathways
QuickGOO14598
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkVCY1B
Atlas of Cancer Signalling NetworkVCY1B
Wikipedia pathwaysVCY1B
Orthology - Evolution
OrthoDB353513
GeneTree (enSembl)ENSG00000129862
Phylogenetic Trees/Animal Genes : TreeFamVCY1B
HOVERGENO14598
HOGENOMO14598
Homologs : HomoloGeneVCY1B
Homology/Alignments : Family Browser (UCSC)VCY1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVCY1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VCY1B
dbVarVCY1B
ClinVarVCY1B
1000_GenomesVCY1B 
Exome Variant ServerVCY1B
ExAC (Exome Aggregation Consortium)VCY1B (select the gene name)
Genetic variants : HAPMAP353513
Genomic Variants (DGV)VCY1B [DGVbeta]
DECIPHER (Syndromes)Y:16168102-16168838  ENSG00000129862
CONAN: Copy Number AnalysisVCY1B 
Mutations
ICGC Data PortalVCY1B 
TCGA Data PortalVCY1B 
Broad Tumor PortalVCY1B
OASIS PortalVCY1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVCY1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVCY1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VCY1B
DgiDB (Drug Gene Interaction Database)VCY1B
DoCM (Curated mutations)VCY1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VCY1B (select a term)
intoGenVCY1B
Cancer3DVCY1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVCY1B
Genetic Testing Registry VCY1B
NextProtO14598 [Medical]
TSGene353513
GENETestsVCY1B
Huge Navigator VCY1B [HugePedia]
snp3D : Map Gene to Disease353513
BioCentury BCIQVCY1B
ClinGenVCY1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353513
Chemical/Pharm GKB GenePA134979097
Clinical trialVCY1B
Miscellaneous
canSAR (ICR)VCY1B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVCY1B
EVEXVCY1B
GoPubMedVCY1B
iHOPVCY1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:51:12 CET 2017

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