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VDAC2 (voltage dependent anion channel 2)

Identity

Other aliasPOR
HGNC (Hugo) VDAC2
LocusID (NCBI) 7417
Atlas_Id 55282
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 76970300 and ends at 76991207 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VDAC2   12672
Cards
Entrez_Gene (NCBI)VDAC2  7417  voltage dependent anion channel 2
AliasesPOR
GeneCards (Weizmann)VDAC2
Ensembl hg19 (Hinxton)ENSG00000165637 [Gene_View]  chr10:76970300-76991207 [Contig_View]  VDAC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165637 [Gene_View]  chr10:76970300-76991207 [Contig_View]  VDAC2 [Vega]
ICGC DataPortalENSG00000165637
TCGA cBioPortalVDAC2
AceView (NCBI)VDAC2
Genatlas (Paris)VDAC2
WikiGenes7417
SOURCE (Princeton)VDAC2
Genetics Home Reference (NIH)VDAC2
Genomic and cartography
GoldenPath hg19 (UCSC)VDAC2  -     chr10:76970300-76991207 +  10q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VDAC2  -     10q22.2   [Description]    (hg38-Dec_2013)
EnsemblVDAC2 - 10q22.2 [CytoView hg19]  VDAC2 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIVDAC2 [Mapview hg19]  VDAC2 [Mapview hg38]
OMIM193245   
Gene and transcription
Genbank (Entrez)AK296635 AK315919 BC000165 BC012883 BC072407
RefSeq transcript (Entrez)NM_001184783 NM_001184823 NM_003375
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)VDAC2
Cluster EST : UnigeneHs.355927 [ NCBI ]
CGAP (NCI)Hs.355927
Alternative Splicing GalleryENSG00000165637
Gene ExpressionVDAC2 [ NCBI-GEO ]   VDAC2 [ EBI - ARRAY_EXPRESS ]   VDAC2 [ SEEK ]   VDAC2 [ MEM ]
Gene Expression Viewer (FireBrowse)VDAC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7417
GTEX Portal (Tissue expression)VDAC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP45880   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP45880  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP45880
Splice isoforms : SwissVarP45880
PhosPhoSitePlusP45880
Domaine pattern : Prosite (Expaxy)EUKARYOTIC_PORIN (PS00558)   
Domains : Interpro (EBI)Porin_dom    Porin_Euk    Porin_Euk/Tom40    VDAC2   
Domain families : Pfam (Sanger)Porin_3 (PF01459)   
Domain families : Pfam (NCBI)pfam01459   
Conserved Domain (NCBI)VDAC2
DMDM Disease mutations7417
Blocks (Seattle)VDAC2
SuperfamilyP45880
Human Protein AtlasENSG00000165637
Peptide AtlasP45880
HPRD01904
IPIIPI00902560   IPI00024145   IPI00216026   IPI01010050   IPI00455531   IPI00917420   IPI00647442   IPI00647902   IPI00844015   
Protein Interaction databases
DIP (DOE-UCLA)P45880
IntAct (EBI)P45880
FunCoupENSG00000165637
BioGRIDVDAC2
STRING (EMBL)VDAC2
ZODIACVDAC2
Ontologies - Pathways
QuickGOP45880
Ontology : AmiGOnucleotide binding  protein binding  nucleus  mitochondrion  mitochondrial outer membrane  mitochondrial inner membrane  anion transport  synaptic vesicle  voltage-gated anion channel activity  porin activity  negative regulation of protein polymerization  mitochondrial nucleoid  myelin sheath  membrane raft  pore complex  transmembrane transport  extracellular exosome  regulation of anion transmembrane transport  regulation of anion transmembrane transport  negative regulation of intrinsic apoptotic signaling pathway  
Ontology : EGO-EBInucleotide binding  protein binding  nucleus  mitochondrion  mitochondrial outer membrane  mitochondrial inner membrane  anion transport  synaptic vesicle  voltage-gated anion channel activity  porin activity  negative regulation of protein polymerization  mitochondrial nucleoid  myelin sheath  membrane raft  pore complex  transmembrane transport  extracellular exosome  regulation of anion transmembrane transport  regulation of anion transmembrane transport  negative regulation of intrinsic apoptotic signaling pathway  
Pathways : KEGGCalcium signaling pathway    Parkinson's disease    Huntington's disease    HTLV-I infection   
NDEx NetworkVDAC2
Atlas of Cancer Signalling NetworkVDAC2
Wikipedia pathwaysVDAC2
Orthology - Evolution
OrthoDB7417
GeneTree (enSembl)ENSG00000165637
Phylogenetic Trees/Animal Genes : TreeFamVDAC2
HOVERGENP45880
HOGENOMP45880
Homologs : HomoloGeneVDAC2
Homology/Alignments : Family Browser (UCSC)VDAC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVDAC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VDAC2
dbVarVDAC2
ClinVarVDAC2
1000_GenomesVDAC2 
Exome Variant ServerVDAC2
ExAC (Exome Aggregation Consortium)VDAC2 (select the gene name)
Genetic variants : HAPMAP7417
Genomic Variants (DGV)VDAC2 [DGVbeta]
DECIPHER (Syndromes)10:76970300-76991207  ENSG00000165637
CONAN: Copy Number AnalysisVDAC2 
Mutations
ICGC Data PortalVDAC2 
TCGA Data PortalVDAC2 
Broad Tumor PortalVDAC2
OASIS PortalVDAC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVDAC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVDAC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch VDAC2
DgiDB (Drug Gene Interaction Database)VDAC2
DoCM (Curated mutations)VDAC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VDAC2 (select a term)
intoGenVDAC2
Cancer3DVDAC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM193245   
Orphanet
MedgenVDAC2
Genetic Testing Registry VDAC2
NextProtP45880 [Medical]
TSGene7417
GENETestsVDAC2
Huge Navigator VDAC2 [HugePedia]
snp3D : Map Gene to Disease7417
BioCentury BCIQVDAC2
ClinGenVDAC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7417
Chemical/Pharm GKB GenePA37295
Clinical trialVDAC2
Miscellaneous
canSAR (ICR)VDAC2 (select the gene name)
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVDAC2
EVEXVDAC2
GoPubMedVDAC2
iHOPVDAC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:33:49 CET 2017

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