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VDAC3 (voltage dependent anion channel 3)

Identity

Alias_symbol (synonym)HD-VDAC3
Other aliasVDAC-3
HGNC (Hugo) VDAC3
LocusID (NCBI) 7419
Atlas_Id 55291
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 42249279 and ends at 42263455 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PRKG1 (10q11.23) / VDAC3 (8p11.21)VDAC3 (8p11.21) / ATP1A1 (1p13.1)VDAC3 (8p11.21) / CDKN1B (12p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VDAC3   12674
Cards
Entrez_Gene (NCBI)VDAC3  7419  voltage dependent anion channel 3
AliasesHD-VDAC3; VDAC-3
GeneCards (Weizmann)VDAC3
Ensembl hg19 (Hinxton)ENSG00000078668 [Gene_View]  chr8:42249279-42263455 [Contig_View]  VDAC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000078668 [Gene_View]  chr8:42249279-42263455 [Contig_View]  VDAC3 [Vega]
ICGC DataPortalENSG00000078668
TCGA cBioPortalVDAC3
AceView (NCBI)VDAC3
Genatlas (Paris)VDAC3
WikiGenes7419
SOURCE (Princeton)VDAC3
Genetics Home Reference (NIH)VDAC3
Genomic and cartography
GoldenPath hg19 (UCSC)VDAC3  -     chr8:42249279-42263455 +  8p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VDAC3  -     8p11.21   [Description]    (hg38-Dec_2013)
EnsemblVDAC3 - 8p11.21 [CytoView hg19]  VDAC3 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBIVDAC3 [Mapview hg19]  VDAC3 [Mapview hg38]
OMIM610029   
Gene and transcription
Genbank (Entrez)AF038962 AK058201 AK307224 AK308760 AM393322
RefSeq transcript (Entrez)NM_001135694 NM_005662
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)VDAC3
Cluster EST : UnigeneHs.699301 [ NCBI ]
CGAP (NCI)Hs.699301
Alternative Splicing GalleryENSG00000078668
Gene ExpressionVDAC3 [ NCBI-GEO ]   VDAC3 [ EBI - ARRAY_EXPRESS ]   VDAC3 [ SEEK ]   VDAC3 [ MEM ]
Gene Expression Viewer (FireBrowse)VDAC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7419
GTEX Portal (Tissue expression)VDAC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y277   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y277  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y277
Splice isoforms : SwissVarQ9Y277
PhosPhoSitePlusQ9Y277
Domaine pattern : Prosite (Expaxy)EUKARYOTIC_PORIN (PS00558)   
Domains : Interpro (EBI)Porin_dom    Porin_Euk    Porin_Euk/Tom40    VDAC3   
Domain families : Pfam (Sanger)Porin_3 (PF01459)   
Domain families : Pfam (NCBI)pfam01459   
Conserved Domain (NCBI)VDAC3
DMDM Disease mutations7419
Blocks (Seattle)VDAC3
SuperfamilyQ9Y277
Human Protein AtlasENSG00000078668
Peptide AtlasQ9Y277
HPRD06750
IPIIPI00031804   IPI00294779   IPI01010397   IPI00983154   IPI00981487   IPI00979708   IPI00973345   IPI00980597   IPI00980300   IPI00973955   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y277
IntAct (EBI)Q9Y277
FunCoupENSG00000078668
BioGRIDVDAC3
STRING (EMBL)VDAC3
ZODIACVDAC3
Ontologies - Pathways
QuickGOQ9Y277
Ontology : AmiGOnucleotide binding  nucleus  mitochondrion  mitochondrial outer membrane  anion transport  voltage-gated anion channel activity  porin activity  adenine transport  pore complex  transmembrane transport  extracellular exosome  regulation of cilium assembly  regulation of anion transmembrane transport  regulation of anion transmembrane transport  
Ontology : EGO-EBInucleotide binding  nucleus  mitochondrion  mitochondrial outer membrane  anion transport  voltage-gated anion channel activity  porin activity  adenine transport  pore complex  transmembrane transport  extracellular exosome  regulation of cilium assembly  regulation of anion transmembrane transport  regulation of anion transmembrane transport  
Pathways : KEGGCalcium signaling pathway    Parkinson's disease    Huntington's disease    Hepatitis B    HTLV-I infection    Viral carcinogenesis   
NDEx NetworkVDAC3
Atlas of Cancer Signalling NetworkVDAC3
Wikipedia pathwaysVDAC3
Orthology - Evolution
OrthoDB7419
GeneTree (enSembl)ENSG00000078668
Phylogenetic Trees/Animal Genes : TreeFamVDAC3
HOVERGENQ9Y277
HOGENOMQ9Y277
Homologs : HomoloGeneVDAC3
Homology/Alignments : Family Browser (UCSC)VDAC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVDAC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VDAC3
dbVarVDAC3
ClinVarVDAC3
1000_GenomesVDAC3 
Exome Variant ServerVDAC3
ExAC (Exome Aggregation Consortium)VDAC3 (select the gene name)
Genetic variants : HAPMAP7419
Genomic Variants (DGV)VDAC3 [DGVbeta]
DECIPHER (Syndromes)8:42249279-42263455  ENSG00000078668
CONAN: Copy Number AnalysisVDAC3 
Mutations
ICGC Data PortalVDAC3 
TCGA Data PortalVDAC3 
Broad Tumor PortalVDAC3
OASIS PortalVDAC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVDAC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVDAC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch VDAC3
DgiDB (Drug Gene Interaction Database)VDAC3
DoCM (Curated mutations)VDAC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VDAC3 (select a term)
intoGenVDAC3
Cancer3DVDAC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610029   
Orphanet
MedgenVDAC3
Genetic Testing Registry VDAC3
NextProtQ9Y277 [Medical]
TSGene7419
GENETestsVDAC3
Huge Navigator VDAC3 [HugePedia]
snp3D : Map Gene to Disease7419
BioCentury BCIQVDAC3
ClinGenVDAC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7419
Chemical/Pharm GKB GenePA37297
Clinical trialVDAC3
Miscellaneous
canSAR (ICR)VDAC3 (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVDAC3
EVEXVDAC3
GoPubMedVDAC3
iHOPVDAC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:33:50 CET 2017

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