Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VEGFA (vascular endothelial growth factor A)

Identity

Alias (NCBI)MVCD1
VEGF
VPF
HGNC (Hugo) VEGFA
HGNC Alias symbVEGF-A
VPF
HGNC Previous nameVEGF
HGNC Previous namevascular endothelial growth factor
LocusID (NCBI) 7422
Atlas_Id 42787
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43770211 and ends at 43786486 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
VEGFA (6p21.1) / DDX27 (20q13.13)VEGFA (6p21.1) / KIF6 (6p21.2)VEGFA (6p21.1) / SUZ12P1 (17q11.2)
VEGFA (6p21.1) / TRBV20-1 ()VEGFA (6p21.1) / VEGFA (6p21.1)VEGFA 6p21.1 / DDX27 20q13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 3 ]
  Multiple Myeloma
t(1;9)(p13;p12) PAX5/HIPK1
t(14;16)(q32;q23) IGH/MAF


External links

Nomenclature
HGNC (Hugo)VEGFA   12680
Cards
Entrez_Gene (NCBI)VEGFA    vascular endothelial growth factor A
AliasesMVCD1; VEGF; VPF
GeneCards (Weizmann)VEGFA
Ensembl hg19 (Hinxton)ENSG00000112715 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112715 [Gene_View]  ENSG00000112715 [Sequence]  chr6:43770211-43786486 [Contig_View]  VEGFA [Vega]
ICGC DataPortalENSG00000112715
TCGA cBioPortalVEGFA
AceView (NCBI)VEGFA
Genatlas (Paris)VEGFA
SOURCE (Princeton)VEGFA
Genetics Home Reference (NIH)VEGFA
Genomic and cartography
GoldenPath hg38 (UCSC)VEGFA  -     chr6:43770211-43786486 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VEGFA  -     6p21.1   [Description]    (hg19-Feb_2009)
GoldenPathVEGFA - 6p21.1 [CytoView hg19]  VEGFA - 6p21.1 [CytoView hg38]
ImmunoBaseENSG00000112715
Genome Data Viewer NCBIVEGFA [Mapview hg19]  
OMIM192240   603933   
Gene and transcription
Genbank (Entrez)AB021221 AB209485 AB451322 AB451451 AF022375
RefSeq transcript (Entrez)NM_001025366 NM_001025367 NM_001025368 NM_001025369 NM_001025370 NM_001033756 NM_001171622 NM_001171623 NM_001171624 NM_001171625 NM_001171626 NM_001171627 NM_001171628 NM_001171629 NM_001171630 NM_001204384 NM_001204385 NM_001287044 NM_001317010 NM_003376
Consensus coding sequences : CCDS (NCBI)VEGFA
Gene ExpressionVEGFA [ NCBI-GEO ]   VEGFA [ EBI - ARRAY_EXPRESS ]   VEGFA [ SEEK ]   VEGFA [ MEM ]
Gene Expression Viewer (FireBrowse)VEGFA [ Firebrowse - Broad ]
GenevisibleExpression of VEGFA in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7422
GTEX Portal (Tissue expression)VEGFA
Human Protein AtlasENSG00000112715-VEGFA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VEGFA
Human Protein Atlas [tissue]ENSG00000112715-VEGFA [tissue]
HPRD01889
Protein Interaction databases
BioGRIDVEGFA
STRING (EMBL)VEGFA
ZODIACVEGFA
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVEGFA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:37:58 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.