| Nomenclature |
HGNC (Hugo) | VENTX 13639 |
| Cards |
Entrez_Gene (NCBI) | VENTX 27287 VENT homeobox |
Aliases | HPX42B; NA88A; VENTX2 |
GeneCards (Weizmann) | VENTX |
Ensembl hg19 (Hinxton) | ENSG00000151650 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000151650 [Gene_View]  ENSG00000151650 [Sequence] chr10:133237904-133241930 [Contig_View] VENTX [Vega] |
ICGC DataPortal | ENSG00000151650 |
TCGA cBioPortal | VENTX |
AceView (NCBI) | VENTX |
Genatlas (Paris) | VENTX |
WikiGenes | 27287 |
SOURCE (Princeton) | VENTX |
Genetics Home Reference (NIH) | VENTX |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | VENTX - chr10:133237904-133241930 + 10q26.3 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | VENTX - 10q26.3 [Description] (hg19-Feb_2009) |
GoldenPath | VENTX - 10q26.3 [CytoView hg19] VENTX - 10q26.3 [CytoView hg38] |
ImmunoBase | ENSG00000151650 |
Mapping of homologs : NCBI | VENTX [Mapview hg19] VENTX [Mapview hg38] |
OMIM | 607158 |
| Gene and transcription |
Genbank (Entrez) | AF068006 BC108915 BC108916 BX089390 CA390754 |
RefSeq transcript (Entrez) | NM_014468 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | VENTX |
Cluster EST : Unigene | Hs.125231 [ NCBI ] |
CGAP (NCI) | Hs.125231 |
Alternative Splicing Gallery | ENSG00000151650 |
Gene Expression | VENTX [ NCBI-GEO ] VENTX [ EBI - ARRAY_EXPRESS ]
VENTX [ SEEK ] VENTX [ MEM ] |
Gene Expression Viewer (FireBrowse) | VENTX [ Firebrowse - Broad ] |
SOURCE (Princeton) | Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60] |
Genevestigator | Expression in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 27287 |
GTEX Portal (Tissue expression) | VENTX |
Human Protein Atlas | ENSG00000151650-VENTX [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | O95231 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | O95231 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | O95231 |
Splice isoforms : SwissVar | O95231 |
PhosPhoSitePlus | O95231 |
Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom |
Domain families : Pfam (Sanger) | Homeobox (PF00046) |
Domain families : Pfam (NCBI) | pfam00046 |
Domain families : Smart (EMBL) | HOX (SM00389) |
Conserved Domain (NCBI) | VENTX |
DMDM Disease mutations | 27287 |
Blocks (Seattle) | VENTX |
Superfamily | O95231 |
Human Protein Atlas [tissue] | ENSG00000151650-VENTX [tissue] |
Peptide Atlas | O95231 |
HPRD | 06197 |
IPI | IPI00004447 |
| Protein Interaction databases |
DIP (DOE-UCLA) | O95231 |
IntAct (EBI) | O95231 |
FunCoup | ENSG00000151650 |
BioGRID | VENTX |
STRING (EMBL) | VENTX |
ZODIAC | VENTX |
| Ontologies - Pathways |
QuickGO | O95231 |
Ontology : AmiGO | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription factor activity protein binding nucleus regulation of transcription by RNA polymerase II multicellular organism development sequence-specific DNA binding sequence-specific DNA binding positive regulation of transcription by RNA polymerase II |
Ontology : EGO-EBI | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription factor activity protein binding nucleus regulation of transcription by RNA polymerase II multicellular organism development sequence-specific DNA binding sequence-specific DNA binding positive regulation of transcription by RNA polymerase II |
NDEx Network | VENTX |
Atlas of Cancer Signalling Network | VENTX |
Wikipedia pathways | VENTX |
| Orthology - Evolution |
OrthoDB | 27287 |
GeneTree (enSembl) | ENSG00000151650 |
Phylogenetic Trees/Animal Genes : TreeFam | VENTX |
HOGENOM | O95231 |
Homologs : HomoloGene | VENTX |
Homology/Alignments : Family Browser (UCSC) | VENTX |
| Gene fusions - Rearrangements |
Fusion : Quiver | VENTX |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | VENTX [hg38] |
dbSNP Single Nucleotide Polymorphism (NCBI) | VENTX |
dbVar | VENTX |
ClinVar | VENTX |
1000_Genomes | VENTX |
Exome Variant Server | VENTX |
ExAC (Exome Aggregation Consortium) | ENSG00000151650 |
GNOMAD Browser | ENSG00000151650 |
Varsome Browser | VENTX |
Genetic variants : HAPMAP | 27287 |
Genomic Variants (DGV) | VENTX [DGVbeta] |
DECIPHER | VENTX [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | VENTX |
| Mutations |
ICGC Data Portal | VENTX |
TCGA Data Portal | VENTX |
Broad Tumor Portal | VENTX |
OASIS Portal | VENTX [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | VENTX [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | VENTX |
Mutations and Diseases : HGMD | VENTX |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search VENTX |
DgiDB (Drug Gene Interaction Database) | VENTX |
DoCM (Curated mutations) | VENTX (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | VENTX (select a term) |
intoGen | VENTX |
Cancer3D | VENTX(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | 607158 |
Orphanet | |
DisGeNET | VENTX |
Medgen | VENTX |
Genetic Testing Registry | VENTX
|
NextProt | O95231 [Medical] |
TSGene | 27287 |
GENETests | VENTX |
Target Validation | VENTX |
Huge Navigator |
VENTX [HugePedia] |
snp3D : Map Gene to Disease | 27287 |
BioCentury BCIQ | VENTX |
ClinGen | VENTX |
| Clinical trials, drugs, therapy |
---|
Chemical/Protein Interactions : CTD | 27287 |
Chemical/Pharm GKB Gene | PA37803 |
Clinical trial | VENTX |
| Miscellaneous |
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canSAR (ICR) | VENTX (select the gene name) |
DataMed Index | VENTX |
| Probes |
---|
| Litterature |
---|
PubMed | 22 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
CoreMine | VENTX |
EVEX | VENTX |
GoPubMed | VENTX |
iHOP | VENTX |