Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VENTX (VENT homeobox)

Identity

Alias_namesVENTX2
VENT-like homeobox 2
VENT homeobox homolog (Xenopus laevis)
Alias_symbol (synonym)HPX42B
Other aliasNA88A
HGNC (Hugo) VENTX
LocusID (NCBI) 27287
Atlas_Id 42790
Location 10q26.3  [Link to chromosome band 10q26]
Location_base_pair Starts at 133237904 and ends at 133241930 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VENTX   13639
Cards
Entrez_Gene (NCBI)VENTX  27287  VENT homeobox
AliasesHPX42B; NA88A; VENTX2
GeneCards (Weizmann)VENTX
Ensembl hg19 (Hinxton)ENSG00000151650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151650 [Gene_View]  ENSG00000151650 [Sequence]  chr10:133237904-133241930 [Contig_View]  VENTX [Vega]
ICGC DataPortalENSG00000151650
TCGA cBioPortalVENTX
AceView (NCBI)VENTX
Genatlas (Paris)VENTX
WikiGenes27287
SOURCE (Princeton)VENTX
Genetics Home Reference (NIH)VENTX
Genomic and cartography
GoldenPath hg38 (UCSC)VENTX  -     chr10:133237904-133241930 +  10q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VENTX  -     10q26.3   [Description]    (hg19-Feb_2009)
EnsemblVENTX - 10q26.3 [CytoView hg19]  VENTX - 10q26.3 [CytoView hg38]
Mapping of homologs : NCBIVENTX [Mapview hg19]  VENTX [Mapview hg38]
OMIM607158   
Gene and transcription
Genbank (Entrez)AF068006 BC108915 BC108916 BX089390 CA390754
RefSeq transcript (Entrez)NM_014468
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VENTX
Cluster EST : UnigeneHs.125231 [ NCBI ]
CGAP (NCI)Hs.125231
Alternative Splicing GalleryENSG00000151650
Gene ExpressionVENTX [ NCBI-GEO ]   VENTX [ EBI - ARRAY_EXPRESS ]   VENTX [ SEEK ]   VENTX [ MEM ]
Gene Expression Viewer (FireBrowse)VENTX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27287
GTEX Portal (Tissue expression)VENTX
Human Protein AtlasENSG00000151650-VENTX [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95231   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95231  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95231
Splice isoforms : SwissVarO95231
PhosPhoSitePlusO95231
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)VENTX
DMDM Disease mutations27287
Blocks (Seattle)VENTX
SuperfamilyO95231
Human Protein Atlas [tissue]ENSG00000151650-VENTX [tissue]
Peptide AtlasO95231
HPRD06197
IPIIPI00004447   
Protein Interaction databases
DIP (DOE-UCLA)O95231
IntAct (EBI)O95231
FunCoupENSG00000151650
BioGRIDVENTX
STRING (EMBL)VENTX
ZODIACVENTX
Ontologies - Pathways
QuickGOO95231
Ontology : AmiGOtranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding  protein binding  nucleus  transcription by RNA polymerase II  multicellular organism development  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  
Ontology : EGO-EBItranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding  protein binding  nucleus  transcription by RNA polymerase II  multicellular organism development  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  
NDEx NetworkVENTX
Atlas of Cancer Signalling NetworkVENTX
Wikipedia pathwaysVENTX
Orthology - Evolution
OrthoDB27287
GeneTree (enSembl)ENSG00000151650
Phylogenetic Trees/Animal Genes : TreeFamVENTX
HOVERGENO95231
HOGENOMO95231
Homologs : HomoloGeneVENTX
Homology/Alignments : Family Browser (UCSC)VENTX
Gene fusions - Rearrangements
Fusion : QuiverVENTX
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVENTX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VENTX
dbVarVENTX
ClinVarVENTX
1000_GenomesVENTX 
Exome Variant ServerVENTX
ExAC (Exome Aggregation Consortium)ENSG00000151650
GNOMAD BrowserENSG00000151650
Genetic variants : HAPMAP27287
Genomic Variants (DGV)VENTX [DGVbeta]
DECIPHERVENTX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVENTX 
Mutations
ICGC Data PortalVENTX 
TCGA Data PortalVENTX 
Broad Tumor PortalVENTX
OASIS PortalVENTX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVENTX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVENTX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VENTX
DgiDB (Drug Gene Interaction Database)VENTX
DoCM (Curated mutations)VENTX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VENTX (select a term)
intoGenVENTX
Cancer3DVENTX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607158   
Orphanet
DisGeNETVENTX
MedgenVENTX
Genetic Testing Registry VENTX
NextProtO95231 [Medical]
TSGene27287
GENETestsVENTX
Target ValidationVENTX
Huge Navigator VENTX [HugePedia]
snp3D : Map Gene to Disease27287
BioCentury BCIQVENTX
ClinGenVENTX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27287
Chemical/Pharm GKB GenePA37803
Clinical trialVENTX
Miscellaneous
canSAR (ICR)VENTX (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVENTX
EVEXVENTX
GoPubMedVENTX
iHOPVENTX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 22 16:57:07 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.