| Nomenclature |
|---|
| HGNC (Hugo) | VENTX 13639 |
| Cards |
|---|
| Entrez_Gene (NCBI) | VENTX 27287 VENT homeobox |
| Aliases | HPX42B; NA88A; VENTX2 |
| GeneCards (Weizmann) | VENTX |
| Ensembl hg19 (Hinxton) | ENSG00000151650 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000151650 [Gene_View] ENSG00000151650 [Sequence] chr10:133237904-133241930 [Contig_View] VENTX [Vega] |
| ICGC DataPortal | ENSG00000151650 |
| TCGA cBioPortal | VENTX |
| AceView (NCBI) | VENTX |
| Genatlas (Paris) | VENTX |
| WikiGenes | 27287 |
| SOURCE (Princeton) | VENTX |
| Genetics Home Reference (NIH) | VENTX |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | VENTX - chr10:133237904-133241930 + 10q26.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | VENTX - 10q26.3 [Description] (hg19-Feb_2009) |
| Ensembl | VENTX - 10q26.3 [CytoView hg19] VENTX - 10q26.3 [CytoView hg38] |
| Mapping of homologs : NCBI | VENTX [Mapview hg19] VENTX [Mapview hg38] |
| OMIM | 607158 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AF068006 BC108915 BC108916 BX089390 CA390754 |
| RefSeq transcript (Entrez) | NM_014468 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | VENTX |
| Cluster EST : Unigene | Hs.125231 [ NCBI ] |
| CGAP (NCI) | Hs.125231 |
| Alternative Splicing Gallery | ENSG00000151650 |
| Gene Expression | VENTX [ NCBI-GEO ] VENTX [ EBI - ARRAY_EXPRESS ]
VENTX [ SEEK ] VENTX [ MEM ] |
| Gene Expression Viewer (FireBrowse) | VENTX [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 27287 |
| GTEX Portal (Tissue expression) | VENTX |
| Human Protein Atlas | ENSG00000151650-VENTX [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | O95231 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | O95231 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | O95231 |
| Splice isoforms : SwissVar | O95231 |
| PhosPhoSitePlus | O95231 |
| Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
| Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom |
| Domain families : Pfam (Sanger) | Homeobox (PF00046) |
| Domain families : Pfam (NCBI) | pfam00046 |
| Domain families : Smart (EMBL) | HOX (SM00389) |
| Conserved Domain (NCBI) | VENTX |
| DMDM Disease mutations | 27287 |
| Blocks (Seattle) | VENTX |
| Superfamily | O95231 |
| Human Protein Atlas [tissue] | ENSG00000151650-VENTX [tissue] |
| Peptide Atlas | O95231 |
| HPRD | 06197 |
| IPI | IPI00004447 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | O95231 |
| IntAct (EBI) | O95231 |
| FunCoup | ENSG00000151650 |
| BioGRID | VENTX |
| STRING (EMBL) | VENTX |
| ZODIAC | VENTX |
| Ontologies - Pathways |
|---|
| QuickGO | O95231 |
| Ontology : AmiGO | DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific protein binding nucleus multicellular organism development sequence-specific DNA binding positive regulation of transcription by RNA polymerase II |
| Ontology : EGO-EBI | DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific protein binding nucleus multicellular organism development sequence-specific DNA binding positive regulation of transcription by RNA polymerase II |
| NDEx Network | VENTX |
| Atlas of Cancer Signalling Network | VENTX |
| Wikipedia pathways | VENTX |
| Orthology - Evolution |
|---|
| OrthoDB | 27287 |
| GeneTree (enSembl) | ENSG00000151650 |
| Phylogenetic Trees/Animal Genes : TreeFam | VENTX |
| HOVERGEN | O95231 |
| HOGENOM | O95231 |
| Homologs : HomoloGene | VENTX |
| Homology/Alignments : Family Browser (UCSC) | VENTX |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | VENTX |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | VENTX [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | VENTX |
| dbVar | VENTX |
| ClinVar | VENTX |
| 1000_Genomes | VENTX |
| Exome Variant Server | VENTX |
| ExAC (Exome Aggregation Consortium) | ENSG00000151650 |
| GNOMAD Browser | ENSG00000151650 |
| Varsome Browser | VENTX |
| Genetic variants : HAPMAP | 27287 |
| Genomic Variants (DGV) | VENTX [DGVbeta] |
| DECIPHER | VENTX [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | VENTX |
| Mutations |
|---|
| ICGC Data Portal | VENTX |
| TCGA Data Portal | VENTX |
| Broad Tumor Portal | VENTX |
| OASIS Portal | VENTX [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | VENTX [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | VENTX |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search VENTX |
| DgiDB (Drug Gene Interaction Database) | VENTX |
| DoCM (Curated mutations) | VENTX (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | VENTX (select a term) |
| intoGen | VENTX |
| Cancer3D | VENTX(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 607158 |
| Orphanet | |
| DisGeNET | VENTX |
| Medgen | VENTX |
| Genetic Testing Registry | VENTX
|
| NextProt | O95231 [Medical] |
| TSGene | 27287 |
| GENETests | VENTX |
| Target Validation | VENTX |
| Huge Navigator |
VENTX [HugePedia] |
| snp3D : Map Gene to Disease | 27287 |
| BioCentury BCIQ | VENTX |
| ClinGen | VENTX |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 27287 |
| Chemical/Pharm GKB Gene | PA37803 |
| Clinical trial | VENTX |
| Miscellaneous |
|---|
| canSAR (ICR) | VENTX (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 19 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | VENTX |
| EVEX | VENTX |
| GoPubMed | VENTX |
| iHOP | VENTX |
