Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VENTXP1 (VENT homeobox pseudogene 1)

Identity

Alias_namesVENT homeobox (Xenopus laevis) pseudogene 1
Alias_symbol (synonym)NA88A
CT18
Other aliasVENTX2P1
HGNC (Hugo) VENTXP1
LocusID (NCBI) 139538
Atlas_Id 43074
Location Xp21.3  [Link to chromosome band Xp21]
Location_base_pair Starts at 26576454 and ends at 26579169 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VENTXP1   30900
Cards
Entrez_Gene (NCBI)VENTXP1  139538  VENT homeobox pseudogene 1
AliasesCT18; NA88A; VENTX2P1
GeneCards (Weizmann)VENTXP1
Ensembl hg19 (Hinxton)ENSG00000259849 [Gene_View]  chrX:26576454-26579169 [Contig_View]  VENTXP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000259849 [Gene_View]  chrX:26576454-26579169 [Contig_View]  VENTXP1 [Vega]
ICGC DataPortalENSG00000259849
TCGA cBioPortalVENTXP1
AceView (NCBI)VENTXP1
Genatlas (Paris)VENTXP1
WikiGenes139538
SOURCE (Princeton)VENTXP1
Genetics Home Reference (NIH)VENTXP1
Genomic and cartography
GoldenPath hg19 (UCSC)VENTXP1  -     chrX:26576454-26579169 +  Xp21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VENTXP1  -     Xp21.3   [Description]    (hg38-Dec_2013)
EnsemblVENTXP1 - Xp21.3 [CytoView hg19]  VENTXP1 - Xp21.3 [CytoView hg38]
Mapping of homologs : NCBIVENTXP1 [Mapview hg19]  VENTXP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF164963 HG512469
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)VENTXP1
Cluster EST : UnigeneHs.447377 [ NCBI ]
CGAP (NCI)Hs.447377
Alternative Splicing GalleryENSG00000259849
Gene ExpressionVENTXP1 [ NCBI-GEO ]   VENTXP1 [ EBI - ARRAY_EXPRESS ]   VENTXP1 [ SEEK ]   VENTXP1 [ MEM ]
Gene Expression Viewer (FireBrowse)VENTXP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139538
GTEX Portal (Tissue expression)VENTXP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C5K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C5K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C5K6
Splice isoforms : SwissVarP0C5K6
PhosPhoSitePlusP0C5K6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VENTXP1
DMDM Disease mutations139538
Blocks (Seattle)VENTXP1
SuperfamilyP0C5K6
Human Protein AtlasENSG00000259849
Peptide AtlasP0C5K6
IPIIPI00868893   
Protein Interaction databases
DIP (DOE-UCLA)P0C5K6
IntAct (EBI)P0C5K6
FunCoupENSG00000259849
BioGRIDVENTXP1
STRING (EMBL)VENTXP1
ZODIACVENTXP1
Ontologies - Pathways
QuickGOP0C5K6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkVENTXP1
Atlas of Cancer Signalling NetworkVENTXP1
Wikipedia pathwaysVENTXP1
Orthology - Evolution
OrthoDB139538
GeneTree (enSembl)ENSG00000259849
Phylogenetic Trees/Animal Genes : TreeFamVENTXP1
HOVERGENP0C5K6
HOGENOMP0C5K6
Homologs : HomoloGeneVENTXP1
Homology/Alignments : Family Browser (UCSC)VENTXP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVENTXP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VENTXP1
dbVarVENTXP1
ClinVarVENTXP1
1000_GenomesVENTXP1 
Exome Variant ServerVENTXP1
ExAC (Exome Aggregation Consortium)VENTXP1 (select the gene name)
Genetic variants : HAPMAP139538
Genomic Variants (DGV)VENTXP1 [DGVbeta]
DECIPHER (Syndromes)X:26576454-26579169  ENSG00000259849
CONAN: Copy Number AnalysisVENTXP1 
Mutations
ICGC Data PortalVENTXP1 
TCGA Data PortalVENTXP1 
Broad Tumor PortalVENTXP1
OASIS PortalVENTXP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDVENTXP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VENTXP1
DgiDB (Drug Gene Interaction Database)VENTXP1
DoCM (Curated mutations)VENTXP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VENTXP1 (select a term)
intoGenVENTXP1
Cancer3DVENTXP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVENTXP1
Genetic Testing Registry VENTXP1
NextProtP0C5K6 [Medical]
TSGene139538
GENETestsVENTXP1
Huge Navigator VENTXP1 [HugePedia]
snp3D : Map Gene to Disease139538
BioCentury BCIQVENTXP1
ClinGenVENTXP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139538
Chemical/Pharm GKB GenePA142670622
Clinical trialVENTXP1
Miscellaneous
canSAR (ICR)VENTXP1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVENTXP1
EVEXVENTXP1
GoPubMedVENTXP1
iHOPVENTXP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:44 CEST 2017

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