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VEPH1 (ventricular zone expressed PH domain containing 1)

Identity

Alias_namesventricular zone expressed PH domain homolog 1 (zebrafish)
Alias_symbol (synonym)FLJ12604
KIAA1692
Other aliasMELT
VEPH
HGNC (Hugo) VEPH1
LocusID (NCBI) 79674
Atlas_Id 55447
Location 3q25.31  [Link to chromosome band 3q25]
Location_base_pair Starts at 156977532 and ends at 157221136 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABCA13 (7p12.3) / VEPH1 (3q25.31)ADRM1 (20q13.33) / VEPH1 (3q25.31)CDYL2 (16q23.2) / VEPH1 (3q25.31)
HDAC7 (12q13.11) / VEPH1 (3q25.31)PQLC2L (3q25.32) / VEPH1 (3q25.31)USP19 (3p21.31) / VEPH1 (3q25.31)
WDR49 (3q26.1) / VEPH1 (3q25.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VEPH1   25735
Cards
Entrez_Gene (NCBI)VEPH1  79674  ventricular zone expressed PH domain containing 1
AliasesMELT; VEPH
GeneCards (Weizmann)VEPH1
Ensembl hg19 (Hinxton)ENSG00000197415 [Gene_View]  chr3:156977532-157221136 [Contig_View]  VEPH1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197415 [Gene_View]  chr3:156977532-157221136 [Contig_View]  VEPH1 [Vega]
ICGC DataPortalENSG00000197415
TCGA cBioPortalVEPH1
AceView (NCBI)VEPH1
Genatlas (Paris)VEPH1
WikiGenes79674
SOURCE (Princeton)VEPH1
Genetics Home Reference (NIH)VEPH1
Genomic and cartography
GoldenPath hg19 (UCSC)VEPH1  -     chr3:156977532-157221136 -  3q25.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VEPH1  -     3q25.31   [Description]    (hg38-Dec_2013)
EnsemblVEPH1 - 3q25.31 [CytoView hg19]  VEPH1 - 3q25.31 [CytoView hg38]
Mapping of homologs : NCBIVEPH1 [Mapview hg19]  VEPH1 [Mapview hg38]
OMIM609594   
Gene and transcription
Genbank (Entrez)AB051479 AK022666 AK027625 AL713656 BC026235
RefSeq transcript (Entrez)NM_001167911 NM_001167912 NM_001167915 NM_001167916 NM_001167917 NM_024621
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)VEPH1
Cluster EST : UnigeneHs.658046 [ NCBI ]
CGAP (NCI)Hs.658046
Alternative Splicing GalleryENSG00000197415
Gene ExpressionVEPH1 [ NCBI-GEO ]   VEPH1 [ EBI - ARRAY_EXPRESS ]   VEPH1 [ SEEK ]   VEPH1 [ MEM ]
Gene Expression Viewer (FireBrowse)VEPH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79674
GTEX Portal (Tissue expression)VEPH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14D04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14D04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14D04
Splice isoforms : SwissVarQ14D04
PhosPhoSitePlusQ14D04
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)ARM-type_fold    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)PH (PF00169)   
Domain families : Pfam (NCBI)pfam00169   
Domain families : Smart (EMBL)PH (SM00233)  
Conserved Domain (NCBI)VEPH1
DMDM Disease mutations79674
Blocks (Seattle)VEPH1
SuperfamilyQ14D04
Human Protein AtlasENSG00000197415
Peptide AtlasQ14D04
HPRD07782
IPIIPI00478192   IPI00855826   IPI00447507   IPI00946091   IPI00946545   IPI00946236   IPI00947050   IPI00945597   IPI00946229   
Protein Interaction databases
DIP (DOE-UCLA)Q14D04
IntAct (EBI)Q14D04
FunCoupENSG00000197415
BioGRIDVEPH1
STRING (EMBL)VEPH1
ZODIACVEPH1
Ontologies - Pathways
QuickGOQ14D04
Ontology : AmiGOplasma membrane  
Ontology : EGO-EBIplasma membrane  
NDEx NetworkVEPH1
Atlas of Cancer Signalling NetworkVEPH1
Wikipedia pathwaysVEPH1
Orthology - Evolution
OrthoDB79674
GeneTree (enSembl)ENSG00000197415
Phylogenetic Trees/Animal Genes : TreeFamVEPH1
HOVERGENQ14D04
HOGENOMQ14D04
Homologs : HomoloGeneVEPH1
Homology/Alignments : Family Browser (UCSC)VEPH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVEPH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VEPH1
dbVarVEPH1
ClinVarVEPH1
1000_GenomesVEPH1 
Exome Variant ServerVEPH1
ExAC (Exome Aggregation Consortium)VEPH1 (select the gene name)
Genetic variants : HAPMAP79674
Genomic Variants (DGV)VEPH1 [DGVbeta]
DECIPHER (Syndromes)3:156977532-157221136  ENSG00000197415
CONAN: Copy Number AnalysisVEPH1 
Mutations
ICGC Data PortalVEPH1 
TCGA Data PortalVEPH1 
Broad Tumor PortalVEPH1
OASIS PortalVEPH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVEPH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVEPH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VEPH1
DgiDB (Drug Gene Interaction Database)VEPH1
DoCM (Curated mutations)VEPH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VEPH1 (select a term)
intoGenVEPH1
Cancer3DVEPH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609594   
Orphanet
MedgenVEPH1
Genetic Testing Registry VEPH1
NextProtQ14D04 [Medical]
TSGene79674
GENETestsVEPH1
Huge Navigator VEPH1 [HugePedia]
snp3D : Map Gene to Disease79674
BioCentury BCIQVEPH1
ClinGenVEPH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79674
Chemical/Pharm GKB GenePA134952229
Clinical trialVEPH1
Miscellaneous
canSAR (ICR)VEPH1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVEPH1
EVEXVEPH1
GoPubMedVEPH1
iHOPVEPH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:24:44 CEST 2017

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