Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VEZF1 (vascular endothelial zinc finger 1)

Identity

Alias_namesZNF161
zinc finger protein 161
Alias_symbol (synonym)DB1
Other alias
HGNC (Hugo) VEZF1
LocusID (NCBI) 7716
Atlas_Id 75601
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 57971547 and ends at 57988264 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MRPS23 (17q22) / VEZF1 (17q22)VEZF1 (17q22) / DDX42 (17q23.3)VEZF1 (17q22) / VEZF1 (17q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VEZF1   12949
Cards
Entrez_Gene (NCBI)VEZF1  7716  vascular endothelial zinc finger 1
AliasesDB1; ZNF161
GeneCards (Weizmann)VEZF1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:57971547-57988264 [Contig_View]  VEZF1 [Vega]
TCGA cBioPortalVEZF1
AceView (NCBI)VEZF1
Genatlas (Paris)VEZF1
WikiGenes7716
SOURCE (Princeton)VEZF1
Genetics Home Reference (NIH)VEZF1
Genomic and cartography
GoldenPath hg38 (UCSC)VEZF1  -     chr17:57971547-57988264 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VEZF1  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblVEZF1 - 17q22 [CytoView hg19]  VEZF1 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIVEZF1 [Mapview hg19]  VEZF1 [Mapview hg38]
OMIM606747   
Gene and transcription
Genbank (Entrez)AA195154 AK058024 BC152726 BG718897 BU729102
RefSeq transcript (Entrez)NM_001330393 NM_007146
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VEZF1
Cluster EST : UnigeneHs.463569 [ NCBI ]
CGAP (NCI)Hs.463569
Gene ExpressionVEZF1 [ NCBI-GEO ]   VEZF1 [ EBI - ARRAY_EXPRESS ]   VEZF1 [ SEEK ]   VEZF1 [ MEM ]
Gene Expression Viewer (FireBrowse)VEZF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7716
GTEX Portal (Tissue expression)VEZF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14119   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14119  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14119
Splice isoforms : SwissVarQ14119
PhosPhoSitePlusQ14119
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)VEZF1
DMDM Disease mutations7716
Blocks (Seattle)VEZF1
SuperfamilyQ14119
Peptide AtlasQ14119
HPRD08416
IPIIPI00028912   
Protein Interaction databases
DIP (DOE-UCLA)Q14119
IntAct (EBI)Q14119
BioGRIDVEZF1
STRING (EMBL)VEZF1
ZODIACVEZF1
Ontologies - Pathways
QuickGOQ14119
Ontology : AmiGOangiogenesis  endothelial cell development  DNA binding  nucleoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  cellular defense response  metal ion binding  
Ontology : EGO-EBIangiogenesis  endothelial cell development  DNA binding  nucleoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  cellular defense response  metal ion binding  
NDEx NetworkVEZF1
Atlas of Cancer Signalling NetworkVEZF1
Wikipedia pathwaysVEZF1
Orthology - Evolution
OrthoDB7716
Phylogenetic Trees/Animal Genes : TreeFamVEZF1
HOVERGENQ14119
HOGENOMQ14119
Homologs : HomoloGeneVEZF1
Homology/Alignments : Family Browser (UCSC)VEZF1
Gene fusions - Rearrangements
Fusion: Tumor Portal VEZF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVEZF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VEZF1
dbVarVEZF1
ClinVarVEZF1
1000_GenomesVEZF1 
Exome Variant ServerVEZF1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP7716
Genomic Variants (DGV)VEZF1 [DGVbeta]
DECIPHERVEZF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVEZF1 
Mutations
ICGC Data PortalVEZF1 
TCGA Data PortalVEZF1 
Broad Tumor PortalVEZF1
OASIS PortalVEZF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVEZF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVEZF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VEZF1
DgiDB (Drug Gene Interaction Database)VEZF1
DoCM (Curated mutations)VEZF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VEZF1 (select a term)
intoGenVEZF1
Cancer3DVEZF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606747   
Orphanet
MedgenVEZF1
Genetic Testing Registry VEZF1
NextProtQ14119 [Medical]
TSGene7716
GENETestsVEZF1
Target ValidationVEZF1
Huge Navigator VEZF1 [HugePedia]
snp3D : Map Gene to Disease7716
BioCentury BCIQVEZF1
ClinGenVEZF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7716
Chemical/Pharm GKB GenePA162408823
Clinical trialVEZF1
Miscellaneous
canSAR (ICR)VEZF1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVEZF1
EVEXVEZF1
GoPubMedVEZF1
iHOPVEZF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:35:22 CET 2017

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