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VEZT (vezatin, adherens junctions transmembrane protein)

Identity

Alias_symbol (synonym)DKFZP761C241
Other aliasVEZATIN
HGNC (Hugo) VEZT
LocusID (NCBI) 55591
Atlas_Id 53910
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 95217746 and ends at 95302790 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDPN (1p36.21) / VEZT (12q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VEZT   18258
Cards
Entrez_Gene (NCBI)VEZT  55591  vezatin, adherens junctions transmembrane protein
AliasesVEZATIN
GeneCards (Weizmann)VEZT
Ensembl hg19 (Hinxton)ENSG00000028203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000028203 [Gene_View]  chr12:95217746-95302790 [Contig_View]  VEZT [Vega]
ICGC DataPortalENSG00000028203
TCGA cBioPortalVEZT
AceView (NCBI)VEZT
Genatlas (Paris)VEZT
WikiGenes55591
SOURCE (Princeton)VEZT
Genetics Home Reference (NIH)VEZT
Genomic and cartography
GoldenPath hg38 (UCSC)VEZT  -     chr12:95217746-95302790 +  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VEZT  -     12q22   [Description]    (hg19-Feb_2009)
EnsemblVEZT - 12q22 [CytoView hg19]  VEZT - 12q22 [CytoView hg38]
Mapping of homologs : NCBIVEZT [Mapview hg19]  VEZT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF216644 AF225417 AF277625 AK001338 AK225303
RefSeq transcript (Entrez)NM_017599
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VEZT
Cluster EST : UnigeneHs.24135 [ NCBI ]
CGAP (NCI)Hs.24135
Alternative Splicing GalleryENSG00000028203
Gene ExpressionVEZT [ NCBI-GEO ]   VEZT [ EBI - ARRAY_EXPRESS ]   VEZT [ SEEK ]   VEZT [ MEM ]
Gene Expression Viewer (FireBrowse)VEZT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55591
GTEX Portal (Tissue expression)VEZT
Human Protein AtlasENSG00000028203-VEZT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBM0
Splice isoforms : SwissVarQ9HBM0
PhosPhoSitePlusQ9HBM0
Domains : Interpro (EBI)Myosin-bd    Vezatin   
Domain families : Pfam (Sanger)Vezatin (PF12632)   
Domain families : Pfam (NCBI)pfam12632   
Conserved Domain (NCBI)VEZT
DMDM Disease mutations55591
Blocks (Seattle)VEZT
SuperfamilyQ9HBM0
Human Protein Atlas [tissue]ENSG00000028203-VEZT [tissue]
Peptide AtlasQ9HBM0
HPRD11671
IPIIPI00029954   IPI00218140   IPI00218143   IPI00480160   IPI00940412   IPI01008865   IPI01020935   IPI01022465   IPI01025802   IPI01022115   IPI01022539   IPI01022278   IPI01022442   IPI01021751   IPI01021271   IPI01022665   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBM0
IntAct (EBI)Q9HBM0
FunCoupENSG00000028203
BioGRIDVEZT
STRING (EMBL)VEZT
ZODIACVEZT
Ontologies - Pathways
QuickGOQ9HBM0
Ontology : AmiGOacrosomal vesicle  nucleoplasm  cytosol  plasma membrane  adherens junction  integral component of membrane  single organismal cell-cell adhesion  myosin binding  
Ontology : EGO-EBIacrosomal vesicle  nucleoplasm  cytosol  plasma membrane  adherens junction  integral component of membrane  single organismal cell-cell adhesion  myosin binding  
NDEx NetworkVEZT
Atlas of Cancer Signalling NetworkVEZT
Wikipedia pathwaysVEZT
Orthology - Evolution
OrthoDB55591
GeneTree (enSembl)ENSG00000028203
Phylogenetic Trees/Animal Genes : TreeFamVEZT
HOVERGENQ9HBM0
HOGENOMQ9HBM0
Homologs : HomoloGeneVEZT
Homology/Alignments : Family Browser (UCSC)VEZT
Gene fusions - Rearrangements
Tumor Fusion PortalVEZT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVEZT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VEZT
dbVarVEZT
ClinVarVEZT
1000_GenomesVEZT 
Exome Variant ServerVEZT
ExAC (Exome Aggregation Consortium)ENSG00000028203
GNOMAD BrowserENSG00000028203
Genetic variants : HAPMAP55591
Genomic Variants (DGV)VEZT [DGVbeta]
DECIPHERVEZT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVEZT 
Mutations
ICGC Data PortalVEZT 
TCGA Data PortalVEZT 
Broad Tumor PortalVEZT
OASIS PortalVEZT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVEZT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVEZT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VEZT
DgiDB (Drug Gene Interaction Database)VEZT
DoCM (Curated mutations)VEZT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VEZT (select a term)
intoGenVEZT
Cancer3DVEZT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVEZT
MedgenVEZT
Genetic Testing Registry VEZT
NextProtQ9HBM0 [Medical]
TSGene55591
GENETestsVEZT
Target ValidationVEZT
Huge Navigator VEZT [HugePedia]
snp3D : Map Gene to Disease55591
BioCentury BCIQVEZT
ClinGenVEZT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55591
Chemical/Pharm GKB GenePA143485667
Clinical trialVEZT
Miscellaneous
canSAR (ICR)VEZT (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVEZT
EVEXVEZT
GoPubMedVEZT
iHOPVEZT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:41:18 CET 2017

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