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VEZT (vezatin, adherens junctions transmembrane protein)

Identity

Alias (NCBI)VEZATIN
HGNC (Hugo) VEZT
HGNC Alias symbDKFZP761C241
LocusID (NCBI) 55591
Atlas_Id 53910
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 95217807 and ends at 95302799 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDPN (1p36.21) / VEZT (12q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)VEZT   18258
Cards
Entrez_Gene (NCBI)VEZT    vezatin, adherens junctions transmembrane protein
AliasesVEZATIN
GeneCards (Weizmann)VEZT
Ensembl hg19 (Hinxton)ENSG00000028203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000028203 [Gene_View]  ENSG00000028203 [Sequence]  chr12:95217807-95302799 [Contig_View]  VEZT [Vega]
ICGC DataPortalENSG00000028203
TCGA cBioPortalVEZT
AceView (NCBI)VEZT
Genatlas (Paris)VEZT
SOURCE (Princeton)VEZT
Genetics Home Reference (NIH)VEZT
Genomic and cartography
GoldenPath hg38 (UCSC)VEZT  -     chr12:95217807-95302799 +  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VEZT  -     12q22   [Description]    (hg19-Feb_2009)
GoldenPathVEZT - 12q22 [CytoView hg19]  VEZT - 12q22 [CytoView hg38]
ImmunoBaseENSG00000028203
Genome Data Viewer NCBIVEZT [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF216644 AF225417 AF277625 AK001338 AK225303
RefSeq transcript (Entrez)NM_001352088 NM_001352089 NM_001352090 NM_001352091 NM_001352092 NM_001352093 NM_001352094 NM_001352095 NM_001352096 NM_001352097 NM_001352098 NM_001352099 NM_001352100 NM_001352101 NM_001352102 NM_001352103 NM_001352104 NM_001352105 NM_001352106 NM_001352107 NM_001352108 NM_001352109 NM_001352110 NM_001352111 NM_001352112 NM_001352113 NM_001352114 NM_001352115 NM_001352116 NM_001352117 NM_001352118 NM_001352119 NM_017599
Consensus coding sequences : CCDS (NCBI)VEZT
Gene ExpressionVEZT [ NCBI-GEO ]   VEZT [ EBI - ARRAY_EXPRESS ]   VEZT [ SEEK ]   VEZT [ MEM ]
Gene Expression Viewer (FireBrowse)VEZT [ Firebrowse - Broad ]
GenevisibleExpression of VEZT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55591
GTEX Portal (Tissue expression)VEZT
Human Protein AtlasENSG00000028203-VEZT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBM0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBM0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBM0
PhosPhoSitePlusQ9HBM0
Domains : Interpro (EBI)Myosin-bd    Vezatin   
Domain families : Pfam (Sanger)Vezatin (PF12632)   
Domain families : Pfam (NCBI)pfam12632   
Conserved Domain (NCBI)VEZT
SuperfamilyQ9HBM0
AlphaFold pdb e-kbQ9HBM0   
Human Protein Atlas [tissue]ENSG00000028203-VEZT [tissue]
HPRD11671
Protein Interaction databases
DIP (DOE-UCLA)Q9HBM0
IntAct (EBI)Q9HBM0
BioGRIDVEZT
STRING (EMBL)VEZT
ZODIACVEZT
Ontologies - Pathways
QuickGOQ9HBM0
Ontology : AmiGOacrosomal vesicle  stereocilia ankle link complex  nucleoplasm  cytosol  adherens junction  integral component of membrane  myosin binding  stereocilium membrane  cell-cell adhesion  
Ontology : EGO-EBIacrosomal vesicle  stereocilia ankle link complex  nucleoplasm  cytosol  adherens junction  integral component of membrane  myosin binding  stereocilium membrane  cell-cell adhesion  
NDEx NetworkVEZT
Atlas of Cancer Signalling NetworkVEZT
Wikipedia pathwaysVEZT
Orthology - Evolution
OrthoDB55591
GeneTree (enSembl)ENSG00000028203
Phylogenetic Trees/Animal Genes : TreeFamVEZT
Homologs : HomoloGeneVEZT
Homology/Alignments : Family Browser (UCSC)VEZT
Gene fusions - Rearrangements
Fusion : QuiverVEZT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVEZT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VEZT
dbVarVEZT
ClinVarVEZT
MonarchVEZT
1000_GenomesVEZT 
Exome Variant ServerVEZT
GNOMAD BrowserENSG00000028203
Varsome BrowserVEZT
ACMGVEZT variants
VarityQ9HBM0
Genomic Variants (DGV)VEZT [DGVbeta]
DECIPHERVEZT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVEZT 
Mutations
ICGC Data PortalVEZT 
TCGA Data PortalVEZT 
Broad Tumor PortalVEZT
OASIS PortalVEZT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVEZT  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVEZT
Mutations and Diseases : HGMDVEZT
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVEZT
DgiDB (Drug Gene Interaction Database)VEZT
DoCM (Curated mutations)VEZT
CIViC (Clinical Interpretations of Variants in Cancer)VEZT
Cancer3DVEZT
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVEZT
MedgenVEZT
Genetic Testing Registry VEZT
NextProtQ9HBM0 [Medical]
GENETestsVEZT
Target ValidationVEZT
Huge Navigator VEZT [HugePedia]
ClinGenVEZT
Clinical trials, drugs, therapy
MyCancerGenomeVEZT
Protein Interactions : CTDVEZT
Pharm GKB GenePA143485667
PharosQ9HBM0
Clinical trialVEZT
Miscellaneous
canSAR (ICR)VEZT
HarmonizomeVEZT
DataMed IndexVEZT
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVEZT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:59 CEST 2021

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