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VGF (VGF nerve growth factor inducible)

Identity

Alias_symbol (synonym)SCG7
SgVII
Other alias
HGNC (Hugo) VGF
LocusID (NCBI) 7425
Atlas_Id 49821
Location 12q22  [Link to chromosome band 12q22]
Location_base_pair Starts at 101162509 and ends at 101165571 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VGF   12684
Cards
Entrez_Gene (NCBI)VGF  7425  VGF nerve growth factor inducible
AliasesSCG7; SgVII
GeneCards (Weizmann)VGF
Ensembl hg19 (Hinxton)ENSG00000128564 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128564 [Gene_View]  ENSG00000128564 [Sequence]  chr7:101162509-101165571 [Contig_View]  VGF [Vega]
ICGC DataPortalENSG00000128564
TCGA cBioPortalVGF
AceView (NCBI)VGF
Genatlas (Paris)VGF
WikiGenes7425
SOURCE (Princeton)VGF
Genetics Home Reference (NIH)VGF
Genomic and cartography
GoldenPath hg38 (UCSC)VGF  -     chr7:101162509-101165571 -  12q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VGF  -     12q22   [Description]    (hg19-Feb_2009)
EnsemblVGF - 12q22 [CytoView hg19]  VGF - 12q22 [CytoView hg38]
Mapping of homologs : NCBIVGF [Mapview hg19]  VGF [Mapview hg38]
OMIM602186   
Gene and transcription
Genbank (Entrez)AK225839 BC006217 BC036537 BC044212 BC063835
RefSeq transcript (Entrez)NM_003378
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VGF
Cluster EST : UnigeneHs.587325 [ NCBI ]
CGAP (NCI)Hs.587325
Alternative Splicing GalleryENSG00000128564
Gene ExpressionVGF [ NCBI-GEO ]   VGF [ EBI - ARRAY_EXPRESS ]   VGF [ SEEK ]   VGF [ MEM ]
Gene Expression Viewer (FireBrowse)VGF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7425
GTEX Portal (Tissue expression)VGF
Human Protein AtlasENSG00000128564-VGF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15240   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15240  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15240
Splice isoforms : SwissVarO15240
PhosPhoSitePlusO15240
Domains : Interpro (EBI)VGF   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VGF
DMDM Disease mutations7425
Blocks (Seattle)VGF
SuperfamilyO15240
Human Protein Atlas [tissue]ENSG00000128564-VGF [tissue]
Peptide AtlasO15240
HPRD03717
IPIIPI00289501   IPI00807678   
Protein Interaction databases
DIP (DOE-UCLA)O15240
IntAct (EBI)O15240
FunCoupENSG00000128564
BioGRIDVGF
STRING (EMBL)VGF
ZODIACVGF
Ontologies - Pathways
QuickGOO15240
Ontology : AmiGOovarian follicle development  response to dietary excess  molecular_function  hormone activity  neuropeptide hormone activity  extracellular space  extracellular space  endoplasmic reticulum lumen  Golgi apparatus  generation of precursor metabolites and energy  growth factor activity  response to cold  regulation of signaling receptor activity  sexual reproduction  insulin secretion  transport vesicle  cytoplasmic vesicle  response to insulin  carbohydrate homeostasis  glucose homeostasis  defense response to bacterium  intracellular membrane-bounded organelle  post-translational protein modification  cellular protein metabolic process  regulation of synaptic plasticity  response to cAMP  
Ontology : EGO-EBIovarian follicle development  response to dietary excess  molecular_function  hormone activity  neuropeptide hormone activity  extracellular space  extracellular space  endoplasmic reticulum lumen  Golgi apparatus  generation of precursor metabolites and energy  growth factor activity  response to cold  regulation of signaling receptor activity  sexual reproduction  insulin secretion  transport vesicle  cytoplasmic vesicle  response to insulin  carbohydrate homeostasis  glucose homeostasis  defense response to bacterium  intracellular membrane-bounded organelle  post-translational protein modification  cellular protein metabolic process  regulation of synaptic plasticity  response to cAMP  
NDEx NetworkVGF
Atlas of Cancer Signalling NetworkVGF
Wikipedia pathwaysVGF
Orthology - Evolution
OrthoDB7425
GeneTree (enSembl)ENSG00000128564
Phylogenetic Trees/Animal Genes : TreeFamVGF
HOVERGENO15240
HOGENOMO15240
Homologs : HomoloGeneVGF
Homology/Alignments : Family Browser (UCSC)VGF
Gene fusions - Rearrangements
Fusion : QuiverVGF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVGF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VGF
dbVarVGF
ClinVarVGF
1000_GenomesVGF 
Exome Variant ServerVGF
ExAC (Exome Aggregation Consortium)ENSG00000128564
GNOMAD BrowserENSG00000128564
Varsome BrowserVGF
Genetic variants : HAPMAP7425
Genomic Variants (DGV)VGF [DGVbeta]
DECIPHERVGF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVGF 
Mutations
ICGC Data PortalVGF 
TCGA Data PortalVGF 
Broad Tumor PortalVGF
OASIS PortalVGF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVGF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVGF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VGF
DgiDB (Drug Gene Interaction Database)VGF
DoCM (Curated mutations)VGF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VGF (select a term)
intoGenVGF
Cancer3DVGF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602186   
Orphanet
DisGeNETVGF
MedgenVGF
Genetic Testing Registry VGF
NextProtO15240 [Medical]
TSGene7425
GENETestsVGF
Target ValidationVGF
Huge Navigator VGF [HugePedia]
snp3D : Map Gene to Disease7425
BioCentury BCIQVGF
ClinGenVGF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7425
Chemical/Pharm GKB GenePA37305
Clinical trialVGF
Miscellaneous
canSAR (ICR)VGF (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVGF
EVEXVGF
GoPubMedVGF
iHOPVGF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Aug 16 11:41:11 CEST 2018

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