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VGLL1 (vestigial like family member 1)

Identity

Alias_namesvestigial like 1 (Drosophila)
vestigial-like family member 1
Alias_symbol (synonym)TONDU
TDU
Other aliasVGL1
HGNC (Hugo) VGLL1
LocusID (NCBI) 51442
Atlas_Id 55078
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 136532152 and ends at 136556807 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HCFC1 (Xq28) / VGLL1 (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VGLL1   20985
Cards
Entrez_Gene (NCBI)VGLL1  51442  vestigial like family member 1
AliasesTDU; VGL1
GeneCards (Weizmann)VGLL1
Ensembl hg19 (Hinxton)ENSG00000102243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102243 [Gene_View]  chrX:136532152-136556807 [Contig_View]  VGLL1 [Vega]
ICGC DataPortalENSG00000102243
TCGA cBioPortalVGLL1
AceView (NCBI)VGLL1
Genatlas (Paris)VGLL1
WikiGenes51442
SOURCE (Princeton)VGLL1
Genetics Home Reference (NIH)VGLL1
Genomic and cartography
GoldenPath hg38 (UCSC)VGLL1  -     chrX:136532152-136556807 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VGLL1  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblVGLL1 - Xq26.3 [CytoView hg19]  VGLL1 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIVGLL1 [Mapview hg19]  VGLL1 [Mapview hg38]
OMIM300583   
Gene and transcription
Genbank (Entrez)AF137387 AI207291 AK309912 BC000045 BC003362
RefSeq transcript (Entrez)NM_016267
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VGLL1
Cluster EST : UnigeneHs.496843 [ NCBI ]
CGAP (NCI)Hs.496843
Alternative Splicing GalleryENSG00000102243
Gene ExpressionVGLL1 [ NCBI-GEO ]   VGLL1 [ EBI - ARRAY_EXPRESS ]   VGLL1 [ SEEK ]   VGLL1 [ MEM ]
Gene Expression Viewer (FireBrowse)VGLL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51442
GTEX Portal (Tissue expression)VGLL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99990   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99990  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99990
Splice isoforms : SwissVarQ99990
PhosPhoSitePlusQ99990
Domains : Interpro (EBI)TDU_repeat    Vg_fam   
Domain families : Pfam (Sanger)Vg_Tdu (PF07545)   
Domain families : Pfam (NCBI)pfam07545   
Domain families : Smart (EMBL)TDU (SM00711)  
Conserved Domain (NCBI)VGLL1
DMDM Disease mutations51442
Blocks (Seattle)VGLL1
SuperfamilyQ99990
Human Protein AtlasENSG00000102243
Peptide AtlasQ99990
HPRD06751
IPIIPI00008333   IPI00552297   IPI00383676   IPI01018930   
Protein Interaction databases
DIP (DOE-UCLA)Q99990
IntAct (EBI)Q99990
FunCoupENSG00000102243
BioGRIDVGLL1
STRING (EMBL)VGLL1
ZODIACVGLL1
Ontologies - Pathways
QuickGOQ99990
Ontology : AmiGOtranscription factor activity, RNA polymerase II distal enhancer sequence-specific binding  transcription coactivator activity  nucleus  nucleus  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  protein C-terminus binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBItranscription factor activity, RNA polymerase II distal enhancer sequence-specific binding  transcription coactivator activity  nucleus  nucleus  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  protein C-terminus binding  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkVGLL1
Atlas of Cancer Signalling NetworkVGLL1
Wikipedia pathwaysVGLL1
Orthology - Evolution
OrthoDB51442
GeneTree (enSembl)ENSG00000102243
Phylogenetic Trees/Animal Genes : TreeFamVGLL1
HOVERGENQ99990
HOGENOMQ99990
Homologs : HomoloGeneVGLL1
Homology/Alignments : Family Browser (UCSC)VGLL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVGLL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VGLL1
dbVarVGLL1
ClinVarVGLL1
1000_GenomesVGLL1 
Exome Variant ServerVGLL1
ExAC (Exome Aggregation Consortium)VGLL1 (select the gene name)
Genetic variants : HAPMAP51442
Genomic Variants (DGV)VGLL1 [DGVbeta]
DECIPHERVGLL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVGLL1 
Mutations
ICGC Data PortalVGLL1 
TCGA Data PortalVGLL1 
Broad Tumor PortalVGLL1
OASIS PortalVGLL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVGLL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVGLL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch VGLL1
DgiDB (Drug Gene Interaction Database)VGLL1
DoCM (Curated mutations)VGLL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VGLL1 (select a term)
intoGenVGLL1
Cancer3DVGLL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300583   
Orphanet
MedgenVGLL1
Genetic Testing Registry VGLL1
NextProtQ99990 [Medical]
TSGene51442
GENETestsVGLL1
Target ValidationVGLL1
Huge Navigator VGLL1 [HugePedia]
snp3D : Map Gene to Disease51442
BioCentury BCIQVGLL1
ClinGenVGLL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51442
Chemical/Pharm GKB GenePA134923162
Clinical trialVGLL1
Miscellaneous
canSAR (ICR)VGLL1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVGLL1
EVEXVGLL1
GoPubMedVGLL1
iHOPVGLL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:02:28 CEST 2017

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