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VGLL1 (vestigial like family member 1)

Identity

Alias (NCBI)TDU
VGL1
HGNC (Hugo) VGLL1
HGNC Alias symbTONDU
TDU
HGNC Previous namevestigial like 1 (Drosophila)
 vestigial-like family member 1
LocusID (NCBI) 51442
Atlas_Id 55078
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 136532215 and ends at 136556799 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HCFC1 (Xq28) / VGLL1 (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)VGLL1   20985
Cards
Entrez_Gene (NCBI)VGLL1    vestigial like family member 1
AliasesTDU; VGL1
GeneCards (Weizmann)VGLL1
Ensembl hg19 (Hinxton)ENSG00000102243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102243 [Gene_View]  ENSG00000102243 [Sequence]  chrX:136532215-136556799 [Contig_View]  VGLL1 [Vega]
ICGC DataPortalENSG00000102243
TCGA cBioPortalVGLL1
AceView (NCBI)VGLL1
Genatlas (Paris)VGLL1
SOURCE (Princeton)VGLL1
Genetics Home Reference (NIH)VGLL1
Genomic and cartography
GoldenPath hg38 (UCSC)VGLL1  -     chrX:136532215-136556799 +  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VGLL1  -     Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPathVGLL1 - Xq26.3 [CytoView hg19]  VGLL1 - Xq26.3 [CytoView hg38]
ImmunoBaseENSG00000102243
Genome Data Viewer NCBIVGLL1 [Mapview hg19]  
OMIM300583   
Gene and transcription
Genbank (Entrez)AF137387 AI207291 AK309912 BC000045 BC003362
RefSeq transcript (Entrez)NM_016267
Consensus coding sequences : CCDS (NCBI)VGLL1
Gene ExpressionVGLL1 [ NCBI-GEO ]   VGLL1 [ EBI - ARRAY_EXPRESS ]   VGLL1 [ SEEK ]   VGLL1 [ MEM ]
Gene Expression Viewer (FireBrowse)VGLL1 [ Firebrowse - Broad ]
GenevisibleExpression of VGLL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51442
GTEX Portal (Tissue expression)VGLL1
Human Protein AtlasENSG00000102243-VGLL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99990   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99990  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99990
PhosPhoSitePlusQ99990
Domains : Interpro (EBI)TDU_repeat    Vg_fam   
Domain families : Pfam (Sanger)Vg_Tdu (PF07545)   
Domain families : Pfam (NCBI)pfam07545   
Domain families : Smart (EMBL)TDU (SM00711)  
Conserved Domain (NCBI)VGLL1
SuperfamilyQ99990
AlphaFold pdb e-kbQ99990   
Human Protein Atlas [tissue]ENSG00000102243-VGLL1 [tissue]
HPRD06751
Protein Interaction databases
DIP (DOE-UCLA)Q99990
IntAct (EBI)Q99990
BioGRIDVGLL1
STRING (EMBL)VGLL1
ZODIACVGLL1
Ontologies - Pathways
QuickGOQ99990
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  nucleus  nucleoplasm  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  nucleus  nucleoplasm  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  positive regulation of transcription, DNA-templated  
NDEx NetworkVGLL1
Atlas of Cancer Signalling NetworkVGLL1
Wikipedia pathwaysVGLL1
Orthology - Evolution
OrthoDB51442
GeneTree (enSembl)ENSG00000102243
Phylogenetic Trees/Animal Genes : TreeFamVGLL1
Homologs : HomoloGeneVGLL1
Homology/Alignments : Family Browser (UCSC)VGLL1
Gene fusions - Rearrangements
Fusion : QuiverVGLL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVGLL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VGLL1
dbVarVGLL1
ClinVarVGLL1
MonarchVGLL1
1000_GenomesVGLL1 
Exome Variant ServerVGLL1
GNOMAD BrowserENSG00000102243
Varsome BrowserVGLL1
ACMGVGLL1 variants
VarityQ99990
Genomic Variants (DGV)VGLL1 [DGVbeta]
DECIPHERVGLL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVGLL1 
Mutations
ICGC Data PortalVGLL1 
TCGA Data PortalVGLL1 
Broad Tumor PortalVGLL1
OASIS PortalVGLL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVGLL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVGLL1
Mutations and Diseases : HGMDVGLL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaVGLL1
DgiDB (Drug Gene Interaction Database)VGLL1
DoCM (Curated mutations)VGLL1
CIViC (Clinical Interpretations of Variants in Cancer)VGLL1
Cancer3DVGLL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300583   
Orphanet
DisGeNETVGLL1
MedgenVGLL1
Genetic Testing Registry VGLL1
NextProtQ99990 [Medical]
GENETestsVGLL1
Target ValidationVGLL1
Huge Navigator VGLL1 [HugePedia]
ClinGenVGLL1
Clinical trials, drugs, therapy
MyCancerGenomeVGLL1
Protein Interactions : CTDVGLL1
Pharm GKB GenePA134923162
PharosQ99990
Clinical trialVGLL1
Miscellaneous
canSAR (ICR)VGLL1
HarmonizomeVGLL1
DataMed IndexVGLL1
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVGLL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:37:59 CEST 2021

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