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VGLL4 (vestigial like family member 4)

Identity

Alias_namesvestigial like 4 (Drosophila)
vestigial-like family member 4
Alias_symbol (synonym)KIAA0121
Other aliasVGL-4
HGNC (Hugo) VGLL4
LocusID (NCBI) 9686
Atlas_Id 52512
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 11597541 and ends at 11685451 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PDE3A (12p12.2) / VGLL4 (3p25.3)VGLL4 (3p25.3) / ATG7 (3p25.3)VGLL4 (3p25.3) / CHL1 (3p26.3)
VGLL4 (3p25.3) / FOXP1 (3p13)VGLL4 (3p25.3) / HILPDA (7q32.1)VGLL4 (3p25.3) / LIMD1 (3p21.31)
VGLL4 (3p25.3) / PRKG1 (10q11.23)VGLL4 (3p25.3) / SH3BP5 (3p25.1)VGLL4 (3p25.3) / SYNPR (3p14.2)
VGLL4 (3p25.3) / TAMM41 (3p25.2)VGLL4 (3p25.3) / UBE2E3 (2q31.3)VGLL4 (3p25.3) / VGLL4 (3p25.3)
VGLL4 3p25.3 / CHL1 3p26.3VGLL4 3p25.3 / FOXP1 3p13VGLL4 3p25.3 / LIMD1 3p21.31
VGLL4 3p25.3 / SH3BP5 3p25.1VGLL4 3p25.3 / SYNPR 3p14.2VGLL4 3p25.3 / TAMM41 3p25.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VGLL4   28966
Cards
Entrez_Gene (NCBI)VGLL4  9686  vestigial like family member 4
AliasesVGL-4
GeneCards (Weizmann)VGLL4
Ensembl hg19 (Hinxton)ENSG00000144560 [Gene_View]  chr3:11597541-11685451 [Contig_View]  VGLL4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144560 [Gene_View]  chr3:11597541-11685451 [Contig_View]  VGLL4 [Vega]
ICGC DataPortalENSG00000144560
TCGA cBioPortalVGLL4
AceView (NCBI)VGLL4
Genatlas (Paris)VGLL4
WikiGenes9686
SOURCE (Princeton)VGLL4
Genetics Home Reference (NIH)VGLL4
Genomic and cartography
GoldenPath hg19 (UCSC)VGLL4  -     chr3:11597541-11685451 -  3p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VGLL4  -     3p25.3   [Description]    (hg38-Dec_2013)
EnsemblVGLL4 - 3p25.3 [CytoView hg19]  VGLL4 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIVGLL4 [Mapview hg19]  VGLL4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI809612 AK126479 AK130542 AK300344 AK307708
RefSeq transcript (Entrez)NM_001128219 NM_001128220 NM_001128221 NM_001284390 NM_001284391 NM_014667
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)VGLL4
Cluster EST : UnigeneHs.740389 [ NCBI ]
CGAP (NCI)Hs.740389
Alternative Splicing GalleryENSG00000144560
Gene ExpressionVGLL4 [ NCBI-GEO ]   VGLL4 [ EBI - ARRAY_EXPRESS ]   VGLL4 [ SEEK ]   VGLL4 [ MEM ]
Gene Expression Viewer (FireBrowse)VGLL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9686
GTEX Portal (Tissue expression)VGLL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14135   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14135  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14135
Splice isoforms : SwissVarQ14135
PhosPhoSitePlusQ14135
Domains : Interpro (EBI)TDU_repeat    VGLL4   
Domain families : Pfam (Sanger)VGLL4 (PF15245)   
Domain families : Pfam (NCBI)pfam15245   
Domain families : Smart (EMBL)TDU (SM00711)  
Conserved Domain (NCBI)VGLL4
DMDM Disease mutations9686
Blocks (Seattle)VGLL4
SuperfamilyQ14135
Human Protein AtlasENSG00000144560
Peptide AtlasQ14135
HPRD11672
IPIIPI00430439   IPI00925895   IPI00794952   IPI00796548   IPI00927718   IPI00795570   IPI00795915   IPI00924954   IPI00925167   IPI00926086   IPI00925627   IPI00924675   IPI00926167   IPI00927446   
Protein Interaction databases
DIP (DOE-UCLA)Q14135
IntAct (EBI)Q14135
FunCoupENSG00000144560
BioGRIDVGLL4
STRING (EMBL)VGLL4
ZODIACVGLL4
Ontologies - Pathways
QuickGOQ14135
Ontology : AmiGOprotein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIprotein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkVGLL4
Atlas of Cancer Signalling NetworkVGLL4
Wikipedia pathwaysVGLL4
Orthology - Evolution
OrthoDB9686
GeneTree (enSembl)ENSG00000144560
Phylogenetic Trees/Animal Genes : TreeFamVGLL4
HOVERGENQ14135
HOGENOMQ14135
Homologs : HomoloGeneVGLL4
Homology/Alignments : Family Browser (UCSC)VGLL4
Gene fusions - Rearrangements
Fusion : MitelmanVGLL4/CHL1 [3p25.3/3p26.3]  
Fusion : MitelmanVGLL4/FOXP1 [3p25.3/3p13]  [t(3;3)(p13;p25)]  
Fusion : MitelmanVGLL4/LIMD1 [3p25.3/3p21.31]  [t(3;3)(p21;p25)]  
Fusion : MitelmanVGLL4/SH3BP5 [3p25.3/3p25.1]  [t(3;3)(p25;p25)]  
Fusion : MitelmanVGLL4/SYNPR [3p25.3/3p14.2]  [t(3;3)(p14;p25)]  
Fusion : MitelmanVGLL4/TAMM41 [3p25.3/3p25.2]  [t(3;3)(p25;p25)]  
Fusion: TCGAVGLL4 3p25.3 CHL1 3p26.3 HNSC
Fusion: TCGAVGLL4 3p25.3 FOXP1 3p13 PRAD
Fusion: TCGAVGLL4 3p25.3 LIMD1 3p21.31 BLCA
Fusion: TCGAVGLL4 3p25.3 SH3BP5 3p25.1 BRCA
Fusion: TCGAVGLL4 3p25.3 SYNPR 3p14.2 BRCA
Fusion: TCGAVGLL4 3p25.3 TAMM41 3p25.2 BRCA LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVGLL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VGLL4
dbVarVGLL4
ClinVarVGLL4
1000_GenomesVGLL4 
Exome Variant ServerVGLL4
ExAC (Exome Aggregation Consortium)VGLL4 (select the gene name)
Genetic variants : HAPMAP9686
Genomic Variants (DGV)VGLL4 [DGVbeta]
DECIPHER (Syndromes)3:11597541-11685451  ENSG00000144560
CONAN: Copy Number AnalysisVGLL4 
Mutations
ICGC Data PortalVGLL4 
TCGA Data PortalVGLL4 
Broad Tumor PortalVGLL4
OASIS PortalVGLL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVGLL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVGLL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VGLL4
DgiDB (Drug Gene Interaction Database)VGLL4
DoCM (Curated mutations)VGLL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VGLL4 (select a term)
intoGenVGLL4
Cancer3DVGLL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVGLL4
Genetic Testing Registry VGLL4
NextProtQ14135 [Medical]
TSGene9686
GENETestsVGLL4
Huge Navigator VGLL4 [HugePedia]
snp3D : Map Gene to Disease9686
BioCentury BCIQVGLL4
ClinGenVGLL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9686
Chemical/Pharm GKB GenePA128394553
Clinical trialVGLL4
Miscellaneous
canSAR (ICR)VGLL4 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVGLL4
EVEXVGLL4
GoPubMedVGLL4
iHOPVGLL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:24:45 CEST 2017

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