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VHLL (VHL like)

Identity

Alias_namesVHLP
VHL pseudogene
Alias_symbol (synonym)VLP
Other alias
HGNC (Hugo) VHLL
LocusID (NCBI) 391104
Atlas_Id 42956
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156298624 and ends at 156299637 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VHLL   30666
Cards
Entrez_Gene (NCBI)VHLL  391104  VHL like
AliasesVHLP; VLP
GeneCards (Weizmann)VHLL
Ensembl hg19 (Hinxton)ENSG00000189030 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189030 [Gene_View]  chr1:156298624-156299637 [Contig_View]  VHLL [Vega]
ICGC DataPortalENSG00000189030
TCGA cBioPortalVHLL
AceView (NCBI)VHLL
Genatlas (Paris)VHLL
WikiGenes391104
SOURCE (Princeton)VHLL
Genetics Home Reference (NIH)VHLL
Genomic and cartography
GoldenPath hg38 (UCSC)VHLL  -     chr1:156298624-156299637 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VHLL  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblVHLL - 1q22 [CytoView hg19]  VHLL - 1q22 [CytoView hg38]
Mapping of homologs : NCBIVHLL [Mapview hg19]  VHLL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA324790 AY494836 BC130596 BC130598
RefSeq transcript (Entrez)NM_001004319
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VHLL
Cluster EST : UnigeneHs.532378 [ NCBI ]
CGAP (NCI)Hs.532378
Alternative Splicing GalleryENSG00000189030
Gene ExpressionVHLL [ NCBI-GEO ]   VHLL [ EBI - ARRAY_EXPRESS ]   VHLL [ SEEK ]   VHLL [ MEM ]
Gene Expression Viewer (FireBrowse)VHLL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391104
GTEX Portal (Tissue expression)VHLL
Human Protein AtlasENSG00000189030-VHLL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6RSH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6RSH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6RSH7
Splice isoforms : SwissVarQ6RSH7
PhosPhoSitePlusQ6RSH7
Domains : Interpro (EBI)VHL    VHL_beta_dom    VHL_tumour_suppress_b/a_dom   
Domain families : Pfam (Sanger)VHL (PF01847)   
Domain families : Pfam (NCBI)pfam01847   
Conserved Domain (NCBI)VHLL
DMDM Disease mutations391104
Blocks (Seattle)VHLL
SuperfamilyQ6RSH7
Human Protein Atlas [tissue]ENSG00000189030-VHLL [tissue]
Peptide AtlasQ6RSH7
HPRD15648
IPIIPI00455461   
Protein Interaction databases
DIP (DOE-UCLA)Q6RSH7
IntAct (EBI)Q6RSH7
FunCoupENSG00000189030
BioGRIDVHLL
STRING (EMBL)VHLL
ZODIACVHLL
Ontologies - Pathways
QuickGOQ6RSH7
Ontology : AmiGOprotein binding  nucleus  protein ubiquitination  VCB complex  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein binding  nucleus  protein ubiquitination  VCB complex  ubiquitin protein ligase activity  
NDEx NetworkVHLL
Atlas of Cancer Signalling NetworkVHLL
Wikipedia pathwaysVHLL
Orthology - Evolution
OrthoDB391104
GeneTree (enSembl)ENSG00000189030
Phylogenetic Trees/Animal Genes : TreeFamVHLL
HOVERGENQ6RSH7
HOGENOMQ6RSH7
Homologs : HomoloGeneVHLL
Homology/Alignments : Family Browser (UCSC)VHLL
Gene fusions - Rearrangements
Tumor Fusion PortalVHLL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVHLL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VHLL
dbVarVHLL
ClinVarVHLL
1000_GenomesVHLL 
Exome Variant ServerVHLL
ExAC (Exome Aggregation Consortium)ENSG00000189030
GNOMAD BrowserENSG00000189030
Genetic variants : HAPMAP391104
Genomic Variants (DGV)VHLL [DGVbeta]
DECIPHERVHLL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVHLL 
Mutations
ICGC Data PortalVHLL 
TCGA Data PortalVHLL 
Broad Tumor PortalVHLL
OASIS PortalVHLL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVHLL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVHLL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VHLL
DgiDB (Drug Gene Interaction Database)VHLL
DoCM (Curated mutations)VHLL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VHLL (select a term)
intoGenVHLL
Cancer3DVHLL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVHLL
MedgenVHLL
Genetic Testing Registry VHLL
NextProtQ6RSH7 [Medical]
TSGene391104
GENETestsVHLL
Target ValidationVHLL
Huge Navigator VHLL [HugePedia]
snp3D : Map Gene to Disease391104
BioCentury BCIQVHLL
ClinGenVHLL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391104
Chemical/Pharm GKB GenePA134987272
Clinical trialVHLL
Miscellaneous
canSAR (ICR)VHLL (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVHLL
EVEXVHLL
GoPubMedVHLL
iHOPVHLL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:41:19 CET 2017

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