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VILL (villin-like)

Identity

Other alias-
HGNC (Hugo) VILL
LocusID (NCBI) 50853
Atlas_Id 75604
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 38035078 and ends at 38048676 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VILL (3p22.2) / MAFF (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VILL   30906
Cards
Entrez_Gene (NCBI)VILL  50853  villin-like
Aliases
GeneCards (Weizmann)VILL
Ensembl hg19 (Hinxton)ENSG00000136059 [Gene_View]  chr3:38035078-38048676 [Contig_View]  VILL [Vega]
Ensembl hg38 (Hinxton)ENSG00000136059 [Gene_View]  chr3:38035078-38048676 [Contig_View]  VILL [Vega]
ICGC DataPortalENSG00000136059
TCGA cBioPortalVILL
AceView (NCBI)VILL
Genatlas (Paris)VILL
WikiGenes50853
SOURCE (Princeton)VILL
Genetics Home Reference (NIH)VILL
Genomic and cartography
GoldenPath hg19 (UCSC)VILL  -     chr3:38035078-38048676 +  3p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VILL  -     3p22.2   [Description]    (hg38-Dec_2013)
EnsemblVILL - 3p22.2 [CytoView hg19]  VILL - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBIVILL [Mapview hg19]  VILL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209574 AK309304 AL702875 BC000243 BC004300
RefSeq transcript (Entrez)NM_015873
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)VILL
Cluster EST : UnigeneHs.103665 [ NCBI ]
CGAP (NCI)Hs.103665
Alternative Splicing GalleryENSG00000136059
Gene ExpressionVILL [ NCBI-GEO ]   VILL [ EBI - ARRAY_EXPRESS ]   VILL [ SEEK ]   VILL [ MEM ]
Gene Expression Viewer (FireBrowse)VILL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50853
GTEX Portal (Tissue expression)VILL
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15195   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15195  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15195
Splice isoforms : SwissVarO15195
PhosPhoSitePlusO15195
Domaine pattern : Prosite (Expaxy)HP (PS51089)   
Domains : Interpro (EBI)ADF-H/Gelsolin-like_dom    Gelsolin-like_dom    Villin-like    Villin/Gelsolin    Villin_headpiece   
Domain families : Pfam (Sanger)Gelsolin (PF00626)    VHP (PF02209)   
Domain families : Pfam (NCBI)pfam00626    pfam02209   
Domain families : Smart (EMBL)GEL (SM00262)  VHP (SM00153)  
Conserved Domain (NCBI)VILL
DMDM Disease mutations50853
Blocks (Seattle)VILL
SuperfamilyO15195
Human Protein AtlasENSG00000136059
Peptide AtlasO15195
HPRD18283
IPIIPI00289639   IPI00215851   IPI00983063   IPI00478836   IPI00926036   IPI00556097   
Protein Interaction databases
DIP (DOE-UCLA)O15195
IntAct (EBI)O15195
FunCoupENSG00000136059
BioGRIDVILL
STRING (EMBL)VILL
ZODIACVILL
Ontologies - Pathways
QuickGOO15195
Ontology : AmiGOactin binding  structural constituent of cytoskeleton  cytoskeleton organization  actin cytoskeleton  actin filament capping  
Ontology : EGO-EBIactin binding  structural constituent of cytoskeleton  cytoskeleton organization  actin cytoskeleton  actin filament capping  
NDEx NetworkVILL
Atlas of Cancer Signalling NetworkVILL
Wikipedia pathwaysVILL
Orthology - Evolution
OrthoDB50853
GeneTree (enSembl)ENSG00000136059
Phylogenetic Trees/Animal Genes : TreeFamVILL
HOVERGENO15195
HOGENOMO15195
Homologs : HomoloGeneVILL
Homology/Alignments : Family Browser (UCSC)VILL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVILL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VILL
dbVarVILL
ClinVarVILL
1000_GenomesVILL 
Exome Variant ServerVILL
ExAC (Exome Aggregation Consortium)VILL (select the gene name)
Genetic variants : HAPMAP50853
Genomic Variants (DGV)VILL [DGVbeta]
DECIPHER (Syndromes)3:38035078-38048676  ENSG00000136059
CONAN: Copy Number AnalysisVILL 
Mutations
ICGC Data PortalVILL 
TCGA Data PortalVILL 
Broad Tumor PortalVILL
OASIS PortalVILL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVILL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVILL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VILL
DgiDB (Drug Gene Interaction Database)VILL
DoCM (Curated mutations)VILL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VILL (select a term)
intoGenVILL
Cancer3DVILL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVILL
Genetic Testing Registry VILL
NextProtO15195 [Medical]
TSGene50853
GENETestsVILL
Huge Navigator VILL [HugePedia]
snp3D : Map Gene to Disease50853
BioCentury BCIQVILL
ClinGenVILL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50853
Chemical/Pharm GKB GenePA134911684
Clinical trialVILL
Miscellaneous
canSAR (ICR)VILL (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVILL
EVEXVILL
GoPubMedVILL
iHOPVILL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:13 CET 2017

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