VIM (vimentin)

Identity

Other names	FLJ36605
HGNC	VIM
Location	10p13
Location_base_pair	Starts at 17311304 and ends at 17319598 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	VIM   12692
Entrez_Gene	VIM  7431  vimentin
	Cards
GeneCards	VIM
Ensembl	VIM [Search_View]   ENSG00000026025 [Gene_View]
Genatlas	VIM
GeneLynx	VIM
eGenome	VIM
euGene	7431
	Genomic and cartography
GoldenPath	VIM  -  10p13   chr10:17311304-17319598 +  10p12.33   [Description]    (hg18-March_2006)
Ensembl	VIM - 10p12.33 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	VIM
	Gene and transcription
Genbank	AF328728 [ ENTREZ ]
Genbank	AK056766 [ ENTREZ ]
Genbank	AK091813 [ ENTREZ ]
Genbank	AK093924 [ ENTREZ ]
Genbank	AK097336 [ ENTREZ ]
RefSeq	NM_003380 [ SRS ]    NM_003380 [ ENTREZ ]
RefSeq	AC_000053 [ SRS ]    AC_000053 [ ENTREZ ]
RefSeq	AC_000142 [ SRS ]    AC_000142 [ ENTREZ ]
RefSeq	NC_000010 [ SRS ]    NC_000010 [ ENTREZ ]
RefSeq	NT_077569 [ SRS ]    NT_077569 [ ENTREZ ]
RefSeq	NW_001837931 [ SRS ]    NW_001837931 [ ENTREZ ]
RefSeq	NW_924584 [ SRS ]    NW_924584 [ ENTREZ ]
AceView	VIM AceView - NCBI
Unigene	Hs.642813 [ SRS ]    Hs.642813 [ NCBI ]     HS642813 [ spliceNest ]
Fast-db	4406 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P08670 [ SRS]    P08670 [ EXPASY ]     P08670 [ INTERPRO ]     P08670 [ UNIPROT ]
Prosite	PS00226 IF [ SRS ]    PS00226 IF [ Expasy ]
Interpro	IPR016044 F [ SRS ]    IPR016044 F [ EBI ]
Interpro	IPR001664 IF [ SRS ]    IPR001664 IF [ EBI ]
Interpro	IPR006821 Intermed_filament_DNA_bd [ SRS ]    IPR006821 Intermed_filament_DNA_bd [ EBI ]
CluSTr	P08670
Pfam	PF00038 Filament [ SRS ]    PF00038 Filament [ Sanger ]    pfam00038 [ NCBI-CDD ]
Pfam	PF04732 Filament_head [ SRS ]    PF04732 Filament_head [ Sanger ]    pfam04732 [ NCBI-CDD ]
Blocks	P08670
PDB	1GK4 [ SRS ]    1GK4 [ PdbSum ],   1GK4 [ IMB ]   1GK4 [ RSDB ]
PDB	1GK6 [ SRS ]    1GK6 [ PdbSum ],   1GK6 [ IMB ]   1GK6 [ RSDB ]
PDB	1GK7 [ SRS ]    1GK7 [ PdbSum ],   1GK7 [ IMB ]   1GK7 [ RSDB ]
HPRD	01899
	Protein Interaction databases
DIP	P08670
IntAct	P08670
	Polymorphism : SNP, mutations, diseases
OMIM	193060    [ map ]
GENECLINICS	193060
SNP	VIM [dbSNP-NCBI]
SNP	NM_003380 [SNP-NCI]
SNP	VIM [GeneSNPs - Utah]  VIM] [HGBASE - SRS]
HAPMAP	VIM [HAPMAP]
COSMIC	VIM [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	VIM
	General knowledge
Family Browser	VIM [UCSC Family Browser]
SOURCE	NM_003380
SMD	Hs.642813
SAGE	Hs.642813
GO	structural constituent of cytoskeleton [Amigo]  structural constituent of cytoskeleton
GO	protein binding [Amigo]  protein binding
GO	protein binding [Amigo]  protein binding
GO	cytoplasm [Amigo]  cytoplasm
GO	cytoskeleton [Amigo]  cytoskeleton
GO	intermediate filament [Amigo]  intermediate filament
GO	cell motility [Amigo]  cell motility
GO	interspecies interaction between organisms [Amigo]  interspecies interaction between organisms
GO	intermediate filament-based process [Amigo]  intermediate filament-based process
KEGG	Cell Communication
PubGene	VIM
TreeFam	VIM
CTD	7431 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	VIM Related clones (RZPD - Berlin)
	PubMed
PubMed	122 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:37:45 2008