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VIM (vimentin)

Identity

Alias (NCBI)-
HGNC (Hugo) VIM
LocusID (NCBI) 7431
Atlas_Id 42791
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 17228241 and ends at 17237593 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL5A2 (2q32.2) / VIM (10p13)ENO3 (17p13.2) / VIM (10p13)FOS (14q24.3) / VIM (10p13)
KRT8 (12q13.13) / VIM (10p13)PRR13 (12q13.13) / VIM (10p13)SPAG9 (17q21.33) / VIM (10p13)
VIM (10p13) / DNM1L (12p11.21)VIM (10p13) / EEA1 (12q22)VIM (10p13) / IQCE (7p22.3)
VIM (10p13) / IQCG (3q29)VIM (10p13) / KRT7 (12q13.13)VIM (10p13) / LAMA4 (6q21)
VIM (10p13) / PLEKHA5 (12p12.3)VIM (10p13) / SIAE (11q24.2)VIM (10p13) / ZNF664 (12q24.31)
VIM 10p13 / DNM1L 12p11.21VIM 10p13 / EEA1 12q22VIM 10p13 / IQCE 7p22.3
VIM 10p13 / LAMA4 6q21VIM 10p13 / PLEKHA5 12p12.3VIM 10p13 / SIAE 11q24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  del(13q) in chronic lymphocytic leukemia


External links

Nomenclature
HGNC (Hugo)VIM   12692
Cards
Entrez_Gene (NCBI)VIM    vimentin
Aliases
GeneCards (Weizmann)VIM
Ensembl hg19 (Hinxton)ENSG00000026025 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000026025 [Gene_View]  ENSG00000026025 [Sequence]  chr10:17228241-17237593 [Contig_View]  VIM [Vega]
ICGC DataPortalENSG00000026025
TCGA cBioPortalVIM
AceView (NCBI)VIM
Genatlas (Paris)VIM
SOURCE (Princeton)VIM
Genetics Home Reference (NIH)VIM
Genomic and cartography
GoldenPath hg38 (UCSC)VIM  -     chr10:17228241-17237593 +  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VIM  -     10p13   [Description]    (hg19-Feb_2009)
GoldenPathVIM - 10p13 [CytoView hg19]  VIM - 10p13 [CytoView hg38]
ImmunoBaseENSG00000026025
Genome Data Viewer NCBIVIM [Mapview hg19]  
OMIM116300   193060   
Gene and transcription
Genbank (Entrez)AF328728 AK056766 AK091813 AK093924 AK097336
RefSeq transcript (Entrez)NM_003380
Consensus coding sequences : CCDS (NCBI)VIM
Gene ExpressionVIM [ NCBI-GEO ]   VIM [ EBI - ARRAY_EXPRESS ]   VIM [ SEEK ]   VIM [ MEM ]
Gene Expression Viewer (FireBrowse)VIM [ Firebrowse - Broad ]
GenevisibleExpression of VIM in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7431
GTEX Portal (Tissue expression)VIM
Human Protein AtlasENSG00000026025-VIM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VIM
Human Protein Atlas [tissue]ENSG00000026025-VIM [tissue]
HPRD01899
Protein Interaction databases
BioGRIDVIM
STRING (EMBL)VIM
ZODIACVIM
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXVIM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:38:01 CEST 2021

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