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VIPAS39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog)

Identity

Alias_namesapical-basolateral polarity regulator
C14orf133
Alias_symbol (synonym)VIPAR
VPS16B
SPE-39
SPE39
hSPE-39
Other alias
HGNC (Hugo) VIPAS39
LocusID (NCBI) 63894
Atlas_Id 56331
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 77426675 and ends at 77457640 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VIPAS39 (14q24.3) / NOXRED1 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VIPAS39   20347
LRG (Locus Reference Genomic)LRG_1019
Cards
Entrez_Gene (NCBI)VIPAS39  63894  VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
AliasesC14orf133; SPE-39; SPE39; VIPAR; 
VPS16B; hSPE-39
GeneCards (Weizmann)VIPAS39
Ensembl hg19 (Hinxton)ENSG00000151445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151445 [Gene_View]  chr14:77426675-77457640 [Contig_View]  VIPAS39 [Vega]
ICGC DataPortalENSG00000151445
TCGA cBioPortalVIPAS39
AceView (NCBI)VIPAS39
Genatlas (Paris)VIPAS39
WikiGenes63894
SOURCE (Princeton)VIPAS39
Genetics Home Reference (NIH)VIPAS39
Genomic and cartography
GoldenPath hg38 (UCSC)VIPAS39  -     chr14:77426675-77457640 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VIPAS39  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblVIPAS39 - 14q24.3 [CytoView hg19]  VIPAS39 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIVIPAS39 [Mapview hg19]  VIPAS39 [Mapview hg38]
OMIM613401   613404   
Gene and transcription
Genbank (Entrez)AA010625 AK022769 AK022925 AK024661 AK098254
RefSeq transcript (Entrez)NM_001193314 NM_001193315 NM_001193316 NM_001193317 NM_022067
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VIPAS39
Cluster EST : UnigeneHs.16157 [ NCBI ]
CGAP (NCI)Hs.16157
Alternative Splicing GalleryENSG00000151445
Gene ExpressionVIPAS39 [ NCBI-GEO ]   VIPAS39 [ EBI - ARRAY_EXPRESS ]   VIPAS39 [ SEEK ]   VIPAS39 [ MEM ]
Gene Expression Viewer (FireBrowse)VIPAS39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63894
GTEX Portal (Tissue expression)VIPAS39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9C1
Splice isoforms : SwissVarQ9H9C1
PhosPhoSitePlusQ9H9C1
Domains : Interpro (EBI)Vps16_C   
Domain families : Pfam (Sanger)Vps16_C (PF04840)   
Domain families : Pfam (NCBI)pfam04840   
Conserved Domain (NCBI)VIPAS39
DMDM Disease mutations63894
Blocks (Seattle)VIPAS39
SuperfamilyQ9H9C1
Human Protein AtlasENSG00000151445
Peptide AtlasQ9H9C1
HPRD10710
IPIIPI00004958   IPI01026083   IPI01025750   IPI00398786   IPI00910378   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9C1
IntAct (EBI)Q9H9C1
FunCoupENSG00000151445
BioGRIDVIPAS39
STRING (EMBL)VIPAS39
ZODIACVIPAS39
Ontologies - Pathways
QuickGOQ9H9C1
Ontology : AmiGOprotein binding  cytoplasm  early endosome  late endosome  transcription, DNA-templated  regulation of transcription, DNA-templated  intracellular protein transport  spermatogenesis  endosome to lysosome transport  endosome to lysosome transport  cell differentiation  HOPS complex  HOPS complex  recycling endosome  autophagosome maturation  
Ontology : EGO-EBIprotein binding  cytoplasm  early endosome  late endosome  transcription, DNA-templated  regulation of transcription, DNA-templated  intracellular protein transport  spermatogenesis  endosome to lysosome transport  endosome to lysosome transport  cell differentiation  HOPS complex  HOPS complex  recycling endosome  autophagosome maturation  
NDEx NetworkVIPAS39
Atlas of Cancer Signalling NetworkVIPAS39
Wikipedia pathwaysVIPAS39
Orthology - Evolution
OrthoDB63894
GeneTree (enSembl)ENSG00000151445
Phylogenetic Trees/Animal Genes : TreeFamVIPAS39
HOVERGENQ9H9C1
HOGENOMQ9H9C1
Homologs : HomoloGeneVIPAS39
Homology/Alignments : Family Browser (UCSC)VIPAS39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVIPAS39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VIPAS39
dbVarVIPAS39
ClinVarVIPAS39
1000_GenomesVIPAS39 
Exome Variant ServerVIPAS39
ExAC (Exome Aggregation Consortium)VIPAS39 (select the gene name)
Genetic variants : HAPMAP63894
Genomic Variants (DGV)VIPAS39 [DGVbeta]
DECIPHERVIPAS39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVIPAS39 
Mutations
ICGC Data PortalVIPAS39 
TCGA Data PortalVIPAS39 
Broad Tumor PortalVIPAS39
OASIS PortalVIPAS39 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDVIPAS39
BioMutasearch VIPAS39
DgiDB (Drug Gene Interaction Database)VIPAS39
DoCM (Curated mutations)VIPAS39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VIPAS39 (select a term)
intoGenVIPAS39
Cancer3DVIPAS39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613401    613404   
Orphanet2459   
MedgenVIPAS39
Genetic Testing Registry VIPAS39
NextProtQ9H9C1 [Medical]
TSGene63894
GENETestsVIPAS39
Target ValidationVIPAS39
Huge Navigator VIPAS39 [HugePedia]
snp3D : Map Gene to Disease63894
BioCentury BCIQVIPAS39
ClinGenVIPAS39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63894
Chemical/Pharm GKB GenePA165479332
Clinical trialVIPAS39
Miscellaneous
canSAR (ICR)VIPAS39 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVIPAS39
EVEXVIPAS39
GoPubMedVIPAS39
iHOPVIPAS39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:18:42 CEST 2017

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