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VIPR1 (vasoactive intestinal peptide receptor 1)

Identity

Alias_symbol (synonym)VPAC1
RDC1
HVR1
VPAC1R
Other aliasII
PACAP-R-2
PACAP-R2
V1RG
VAPC1
VIP-R-1
VIPR
VIRG
VPCAP1R
HGNC (Hugo) VIPR1
LocusID (NCBI) 7433
Atlas_Id 42792
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42489299 and ends at 42537573 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HMGA2 (12q14.3) / VIPR1 (3p22.1)VIPR1 (3p22.1) / HLA-DRB1 (6p21.32)VIPR1 (3p22.1) / SCIN (7p21.3)
YBX3 (12p13.2) / VIPR1 (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VIPR1   12694
Cards
Entrez_Gene (NCBI)VIPR1  7433  vasoactive intestinal peptide receptor 1
AliasesHVR1; II; PACAP-R-2; PACAP-R2; 
RDC1; V1RG; VAPC1; VIP-R-1; VIPR; VIRG; VPAC1; VPAC1R; VPCAP1R
GeneCards (Weizmann)VIPR1
Ensembl hg19 (Hinxton)ENSG00000114812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114812 [Gene_View]  chr3:42489299-42537573 [Contig_View]  VIPR1 [Vega]
ICGC DataPortalENSG00000114812
TCGA cBioPortalVIPR1
AceView (NCBI)VIPR1
Genatlas (Paris)VIPR1
WikiGenes7433
SOURCE (Princeton)VIPR1
Genetics Home Reference (NIH)VIPR1
Genomic and cartography
GoldenPath hg38 (UCSC)VIPR1  -     chr3:42489299-42537573 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VIPR1  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblVIPR1 - 3p22.1 [CytoView hg19]  VIPR1 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIVIPR1 [Mapview hg19]  VIPR1 [Mapview hg38]
OMIM192321   
Gene and transcription
Genbank (Entrez)AK056819 AK123943 AK126759 AK293548 AK294609
RefSeq transcript (Entrez)NM_001251882 NM_001251883 NM_001251884 NM_001251885 NM_004624
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VIPR1
Cluster EST : UnigeneHs.348500 [ NCBI ]
CGAP (NCI)Hs.348500
Alternative Splicing GalleryENSG00000114812
Gene ExpressionVIPR1 [ NCBI-GEO ]   VIPR1 [ EBI - ARRAY_EXPRESS ]   VIPR1 [ SEEK ]   VIPR1 [ MEM ]
Gene Expression Viewer (FireBrowse)VIPR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7433
GTEX Portal (Tissue expression)VIPR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32241   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP32241  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP32241
Splice isoforms : SwissVarP32241
PhosPhoSitePlusP32241
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_1 (PS00649)    G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_3 (PS50227)    G_PROTEIN_RECEP_F2_4 (PS50261)   
Domains : Interpro (EBI)GPCR_2-like    GPCR_2_extracellular_dom    GPCR_2_secretin-like    GPCR_2_secretin-like_CS    GPCR_2_VIP_rcpt    GPCR_2_VIP_rcpt_1   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    HRM (PF02793)   
Domain families : Pfam (NCBI)pfam00002    pfam02793   
Domain families : Smart (EMBL)HormR (SM00008)  
Conserved Domain (NCBI)VIPR1
DMDM Disease mutations7433
Blocks (Seattle)VIPR1
PDB (SRS)1OF2    1OGT    3B3I    3B6S    3DTX    3HCV    5DEF    5DEG    5IB1    5IB2    5IB3    5IB4    5IB5   
PDB (PDBSum)1OF2    1OGT    3B3I    3B6S    3DTX    3HCV    5DEF    5DEG    5IB1    5IB2    5IB3    5IB4    5IB5   
PDB (IMB)1OF2    1OGT    3B3I    3B6S    3DTX    3HCV    5DEF    5DEG    5IB1    5IB2    5IB3    5IB4    5IB5   
PDB (RSDB)1OF2    1OGT    3B3I    3B6S    3DTX    3HCV    5DEF    5DEG    5IB1    5IB2    5IB3    5IB4    5IB5   
Structural Biology KnowledgeBase1OF2    1OGT    3B3I    3B6S    3DTX    3HCV    5DEF    5DEG    5IB1    5IB2    5IB3    5IB4    5IB5   
SCOP (Structural Classification of Proteins)1OF2    1OGT    3B3I    3B6S    3DTX    3HCV    5DEF    5DEG    5IB1    5IB2    5IB3    5IB4    5IB5   
CATH (Classification of proteins structures)1OF2    1OGT    3B3I    3B6S    3DTX    3HCV    5DEF    5DEG    5IB1    5IB2    5IB3    5IB4    5IB5   
SuperfamilyP32241
Human Protein AtlasENSG00000114812
Peptide AtlasP32241
HPRD01890
IPIIPI00027680   IPI00218266   IPI00909852   IPI01015005   IPI00796026   IPI00927845   IPI00925946   IPI00926284   
Protein Interaction databases
DIP (DOE-UCLA)P32241
IntAct (EBI)P32241
FunCoupENSG00000114812
BioGRIDVIPR1
STRING (EMBL)VIPR1
ZODIACVIPR1
Ontologies - Pathways
QuickGOP32241
Ontology : AmiGOvasoactive intestinal polypeptide receptor activity  protein binding  plasma membrane  integral component of plasma membrane  muscle contraction  immune response  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  chemical synaptic transmission  digestion  positive regulation of cell proliferation  receptor complex  
Ontology : EGO-EBIvasoactive intestinal polypeptide receptor activity  protein binding  plasma membrane  integral component of plasma membrane  muscle contraction  immune response  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  chemical synaptic transmission  digestion  positive regulation of cell proliferation  receptor complex  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkVIPR1
Atlas of Cancer Signalling NetworkVIPR1
Wikipedia pathwaysVIPR1
Orthology - Evolution
OrthoDB7433
GeneTree (enSembl)ENSG00000114812
Phylogenetic Trees/Animal Genes : TreeFamVIPR1
HOVERGENP32241
HOGENOMP32241
Homologs : HomoloGeneVIPR1
Homology/Alignments : Family Browser (UCSC)VIPR1
Gene fusions - Rearrangements
Fusion Cancer (Beijing)VIPR1 [3p22.1]  -  HLA-DRB1 [6p21.32]  [FUSC003126]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVIPR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VIPR1
dbVarVIPR1
ClinVarVIPR1
1000_GenomesVIPR1 
Exome Variant ServerVIPR1
ExAC (Exome Aggregation Consortium)VIPR1 (select the gene name)
Genetic variants : HAPMAP7433
Genomic Variants (DGV)VIPR1 [DGVbeta]
DECIPHERVIPR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVIPR1 
Mutations
ICGC Data PortalVIPR1 
TCGA Data PortalVIPR1 
Broad Tumor PortalVIPR1
OASIS PortalVIPR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVIPR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVIPR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VIPR1
DgiDB (Drug Gene Interaction Database)VIPR1
DoCM (Curated mutations)VIPR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VIPR1 (select a term)
intoGenVIPR1
Cancer3DVIPR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM192321   
Orphanet
MedgenVIPR1
Genetic Testing Registry VIPR1
NextProtP32241 [Medical]
TSGene7433
GENETestsVIPR1
Target ValidationVIPR1
Huge Navigator VIPR1 [HugePedia]
snp3D : Map Gene to Disease7433
BioCentury BCIQVIPR1
ClinGenVIPR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7433
Chemical/Pharm GKB GenePA37313
Clinical trialVIPR1
Miscellaneous
canSAR (ICR)VIPR1 (select the gene name)
Probes
Litterature
PubMed92 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVIPR1
EVEXVIPR1
GoPubMedVIPR1
iHOPVIPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:37:59 CEST 2017

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