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VIRMA (vir like m6A methyltransferase associated)

Identity

Alias_namesKIAA1429
KIAA1429
Alias_symbol (synonym)DKFZP434I116
fSAP121
Other aliasMSTP054
HGNC (Hugo) VIRMA
LocusID (NCBI) 25962
Atlas_Id 79208
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 94487777 and ends at 94553518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)VIRMA   24500
Cards
Entrez_Gene (NCBI)VIRMA  25962  vir like m6A methyltransferase associated
AliasesKIAA1429; MSTP054; fSAP121
GeneCards (Weizmann)VIRMA
Ensembl hg19 (Hinxton)ENSG00000164944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164944 [Gene_View]  chr8:94487777-94553518 [Contig_View]  VIRMA [Vega]
ICGC DataPortalENSG00000164944
TCGA cBioPortalVIRMA
AceView (NCBI)VIRMA
Genatlas (Paris)VIRMA
WikiGenes25962
SOURCE (Princeton)VIRMA
Genetics Home Reference (NIH)VIRMA
Genomic and cartography
GoldenPath hg38 (UCSC)VIRMA  -     chr8:94487777-94553518 -  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VIRMA  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblVIRMA - 8q22.1 [CytoView hg19]  VIRMA - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBIVIRMA [Mapview hg19]  VIRMA [Mapview hg38]
OMIM616447   
Gene and transcription
Genbank (Entrez)AA731668 AB037850 AF116724 AK000668 AK022906
RefSeq transcript (Entrez)NM_015496 NM_183009
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VIRMA
Cluster EST : UnigeneHs.202238 [ NCBI ]
CGAP (NCI)Hs.202238
Alternative Splicing GalleryENSG00000164944
Gene ExpressionVIRMA [ NCBI-GEO ]   VIRMA [ EBI - ARRAY_EXPRESS ]   VIRMA [ SEEK ]   VIRMA [ MEM ]
Gene Expression Viewer (FireBrowse)VIRMA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25962
GTEX Portal (Tissue expression)VIRMA
Human Protein AtlasENSG00000164944-VIRMA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ69YN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ69YN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ69YN4
Splice isoforms : SwissVarQ69YN4
PhosPhoSitePlusQ69YN4
Domains : Interpro (EBI)ARM-type_fold    VIR_N    Virilizer   
Domain families : Pfam (Sanger)VIR_N (PF15912)   
Domain families : Pfam (NCBI)pfam15912   
Conserved Domain (NCBI)VIRMA
DMDM Disease mutations25962
Blocks (Seattle)VIRMA
SuperfamilyQ69YN4
Human Protein Atlas [tissue]ENSG00000164944-VIRMA [tissue]
Peptide AtlasQ69YN4
IPIIPI00036742   IPI00868931   IPI00789281   IPI00337420   IPI00983737   
Protein Interaction databases
DIP (DOE-UCLA)Q69YN4
IntAct (EBI)Q69YN4
FunCoupENSG00000164944
BioGRIDVIRMA
STRING (EMBL)VIRMA
ZODIACVIRMA
Ontologies - Pathways
QuickGOQ69YN4
Ontology : AmiGORNA binding  nucleoplasm  cytosol  mRNA processing  RNA splicing  nuclear body  nuclear speck  RNA N6-methyladenosine methyltransferase complex  mRNA methylation  
Ontology : EGO-EBIRNA binding  nucleoplasm  cytosol  mRNA processing  RNA splicing  nuclear body  nuclear speck  RNA N6-methyladenosine methyltransferase complex  mRNA methylation  
NDEx NetworkVIRMA
Atlas of Cancer Signalling NetworkVIRMA
Wikipedia pathwaysVIRMA
Orthology - Evolution
OrthoDB25962
GeneTree (enSembl)ENSG00000164944
Phylogenetic Trees/Animal Genes : TreeFamVIRMA
HOVERGENQ69YN4
HOGENOMQ69YN4
Homologs : HomoloGeneVIRMA
Homology/Alignments : Family Browser (UCSC)VIRMA
Gene fusions - Rearrangements
Tumor Fusion PortalVIRMA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVIRMA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VIRMA
dbVarVIRMA
ClinVarVIRMA
1000_GenomesVIRMA 
Exome Variant ServerVIRMA
ExAC (Exome Aggregation Consortium)ENSG00000164944
GNOMAD BrowserENSG00000164944
Genetic variants : HAPMAP25962
Genomic Variants (DGV)VIRMA [DGVbeta]
DECIPHERVIRMA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVIRMA 
Mutations
ICGC Data PortalVIRMA 
TCGA Data PortalVIRMA 
Broad Tumor PortalVIRMA
OASIS PortalVIRMA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDVIRMA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VIRMA
DgiDB (Drug Gene Interaction Database)VIRMA
DoCM (Curated mutations)VIRMA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VIRMA (select a term)
intoGenVIRMA
Cancer3DVIRMA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616447   
Orphanet
DisGeNETVIRMA
MedgenVIRMA
Genetic Testing Registry VIRMA
NextProtQ69YN4 [Medical]
TSGene25962
GENETestsVIRMA
Target ValidationVIRMA
Huge Navigator VIRMA [HugePedia]
snp3D : Map Gene to Disease25962
BioCentury BCIQVIRMA
ClinGenVIRMA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25962
Chemical/Pharm GKB GenePA142671611
Clinical trialVIRMA
Miscellaneous
canSAR (ICR)VIRMA (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVIRMA
EVEXVIRMA
GoPubMedVIRMA
iHOPVIRMA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:19:09 CET 2017

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