Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VIT (vitrin)

Identity

Other alias-
HGNC (Hugo) VIT
LocusID (NCBI) 5212
Atlas_Id 75608
Location 2p22.2  [Link to chromosome band 2p22]
Location_base_pair Starts at 36923833 and ends at 37041937 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VIT (2p22.2) / VIT (2p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VIT   12697
Cards
Entrez_Gene (NCBI)VIT  5212  vitrin
Aliases
GeneCards (Weizmann)VIT
Ensembl hg19 (Hinxton)ENSG00000205221 [Gene_View]  chr2:36923833-37041937 [Contig_View]  VIT [Vega]
Ensembl hg38 (Hinxton)ENSG00000205221 [Gene_View]  chr2:36923833-37041937 [Contig_View]  VIT [Vega]
ICGC DataPortalENSG00000205221
TCGA cBioPortalVIT
AceView (NCBI)VIT
Genatlas (Paris)VIT
WikiGenes5212
SOURCE (Princeton)VIT
Genetics Home Reference (NIH)VIT
Genomic and cartography
GoldenPath hg19 (UCSC)VIT  -     chr2:36923833-37041937 +  2p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VIT  -     2p22.2   [Description]    (hg38-Dec_2013)
EnsemblVIT - 2p22.2 [CytoView hg19]  VIT - 2p22.2 [CytoView hg38]
Mapping of homologs : NCBIVIT [Mapview hg19]  VIT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF063833 AK056772 AK292149 AK299426 AL832679
RefSeq transcript (Entrez)NM_001177969 NM_001177970 NM_001177971 NM_001177972 NM_053276
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)VIT
Cluster EST : UnigeneHs.137415 [ NCBI ]
CGAP (NCI)Hs.137415
Alternative Splicing GalleryENSG00000205221
Gene ExpressionVIT [ NCBI-GEO ]   VIT [ EBI - ARRAY_EXPRESS ]   VIT [ SEEK ]   VIT [ MEM ]
Gene Expression Viewer (FireBrowse)VIT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5212
GTEX Portal (Tissue expression)VIT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXI7
Splice isoforms : SwissVarQ6UXI7
PhosPhoSitePlusQ6UXI7
Domaine pattern : Prosite (Expaxy)LCCL (PS50820)    VWFA (PS50234)   
Domains : Interpro (EBI)LCCL    Vitrin    VWF_A   
Domain families : Pfam (Sanger)LCCL (PF03815)    VWA (PF00092)   
Domain families : Pfam (NCBI)pfam03815    pfam00092   
Domain families : Smart (EMBL)LCCL (SM00603)  VWA (SM00327)  
Conserved Domain (NCBI)VIT
DMDM Disease mutations5212
Blocks (Seattle)VIT
SuperfamilyQ6UXI7
Human Protein AtlasENSG00000205221
Peptide AtlasQ6UXI7
HPRD18284
IPIIPI00785025   IPI00964774   IPI00785115   IPI00963930   IPI00910506   IPI00784236   IPI00647679   IPI00946217   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXI7
IntAct (EBI)Q6UXI7
FunCoupENSG00000205221
BioGRIDVIT
STRING (EMBL)VIT
ZODIACVIT
Ontologies - Pathways
QuickGOQ6UXI7
Ontology : AmiGOglycosaminoglycan binding  interstitial matrix  positive regulation of cell-substrate adhesion  extracellular matrix organization  
Ontology : EGO-EBIglycosaminoglycan binding  interstitial matrix  positive regulation of cell-substrate adhesion  extracellular matrix organization  
NDEx NetworkVIT
Atlas of Cancer Signalling NetworkVIT
Wikipedia pathwaysVIT
Orthology - Evolution
OrthoDB5212
GeneTree (enSembl)ENSG00000205221
Phylogenetic Trees/Animal Genes : TreeFamVIT
HOVERGENQ6UXI7
HOGENOMQ6UXI7
Homologs : HomoloGeneVIT
Homology/Alignments : Family Browser (UCSC)VIT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVIT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VIT
dbVarVIT
ClinVarVIT
1000_GenomesVIT 
Exome Variant ServerVIT
ExAC (Exome Aggregation Consortium)VIT (select the gene name)
Genetic variants : HAPMAP5212
Genomic Variants (DGV)VIT [DGVbeta]
DECIPHER (Syndromes)2:36923833-37041937  ENSG00000205221
CONAN: Copy Number AnalysisVIT 
Mutations
ICGC Data PortalVIT 
TCGA Data PortalVIT 
Broad Tumor PortalVIT
OASIS PortalVIT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVIT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVIT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VIT
DgiDB (Drug Gene Interaction Database)VIT
DoCM (Curated mutations)VIT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VIT (select a term)
intoGenVIT
Cancer3DVIT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVIT
Genetic Testing Registry VIT
NextProtQ6UXI7 [Medical]
TSGene5212
GENETestsVIT
Huge Navigator VIT [HugePedia]
snp3D : Map Gene to Disease5212
BioCentury BCIQVIT
ClinGenVIT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5212
Chemical/Pharm GKB GenePA37316
Clinical trialVIT
Miscellaneous
canSAR (ICR)VIT (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVIT
EVEXVIT
GoPubMedVIT
iHOPVIT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:51:13 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.