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VMAC (vimentin-type intermediate filament associated coiled-coil protein)

Identity

Other alias-
HGNC (Hugo) VMAC
LocusID (NCBI) 400673
Atlas_Id 75612
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5904841 and ends at 5910252 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VMAC (19p13.3) / CAPS (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VMAC   33803
Cards
Entrez_Gene (NCBI)VMAC  400673  vimentin-type intermediate filament associated coiled-coil protein
Aliases
GeneCards (Weizmann)VMAC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:5904841-5910252 [Contig_View]  VMAC [Vega]
TCGA cBioPortalVMAC
AceView (NCBI)VMAC
Genatlas (Paris)VMAC
WikiGenes400673
SOURCE (Princeton)VMAC
Genetics Home Reference (NIH)VMAC
Genomic and cartography
GoldenPath hg38 (UCSC)VMAC  -     chr19:5904841-5910252 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VMAC  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblVMAC - 19p13.3 [CytoView hg19]  VMAC - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIVMAC [Mapview hg19]  VMAC [Mapview hg38]
OMIM617204   
Gene and transcription
Genbank (Entrez)AK124162 BC110802 DA541168
RefSeq transcript (Entrez)NM_001017921
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VMAC
Cluster EST : UnigeneHs.620821 [ NCBI ]
CGAP (NCI)Hs.620821
Gene ExpressionVMAC [ NCBI-GEO ]   VMAC [ EBI - ARRAY_EXPRESS ]   VMAC [ SEEK ]   VMAC [ MEM ]
Gene Expression Viewer (FireBrowse)VMAC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400673
GTEX Portal (Tissue expression)VMAC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2NL98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2NL98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2NL98
Splice isoforms : SwissVarQ2NL98
PhosPhoSitePlusQ2NL98
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VMAC
DMDM Disease mutations400673
Blocks (Seattle)VMAC
SuperfamilyQ2NL98
Peptide AtlasQ2NL98
HPRD18623
IPIIPI00175793   
Protein Interaction databases
DIP (DOE-UCLA)Q2NL98
IntAct (EBI)Q2NL98
BioGRIDVMAC
STRING (EMBL)VMAC
ZODIACVMAC
Ontologies - Pathways
QuickGOQ2NL98
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkVMAC
Atlas of Cancer Signalling NetworkVMAC
Wikipedia pathwaysVMAC
Orthology - Evolution
OrthoDB400673
Phylogenetic Trees/Animal Genes : TreeFamVMAC
HOVERGENQ2NL98
HOGENOMQ2NL98
Homologs : HomoloGeneVMAC
Homology/Alignments : Family Browser (UCSC)VMAC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVMAC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VMAC
dbVarVMAC
ClinVarVMAC
1000_GenomesVMAC 
Exome Variant ServerVMAC
ExAC (Exome Aggregation Consortium)VMAC (select the gene name)
Genetic variants : HAPMAP400673
Genomic Variants (DGV)VMAC [DGVbeta]
DECIPHERVMAC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVMAC 
Mutations
ICGC Data PortalVMAC 
TCGA Data PortalVMAC 
Broad Tumor PortalVMAC
OASIS PortalVMAC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVMAC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVMAC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VMAC
DgiDB (Drug Gene Interaction Database)VMAC
DoCM (Curated mutations)VMAC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VMAC (select a term)
intoGenVMAC
Cancer3DVMAC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617204   
Orphanet
MedgenVMAC
Genetic Testing Registry VMAC
NextProtQ2NL98 [Medical]
TSGene400673
GENETestsVMAC
Target ValidationVMAC
Huge Navigator VMAC [HugePedia]
snp3D : Map Gene to Disease400673
BioCentury BCIQVMAC
ClinGenVMAC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400673
Chemical/Pharm GKB GenePA165394584
Clinical trialVMAC
Miscellaneous
canSAR (ICR)VMAC (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVMAC
EVEXVMAC
GoPubMedVMAC
iHOPVMAC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:48:36 CEST 2017

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