Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VMO1 (vitelline membrane outer layer 1 homolog)

Identity

Alias_namesvitelline membrane outer layer 1 homolog (chicken)
Other aliasERGA6350
PRO21055
HGNC (Hugo) VMO1
LocusID (NCBI) 284013
Atlas_Id 75613
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4785285 and ends at 4786434 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VMO1   30387
Cards
Entrez_Gene (NCBI)VMO1  284013  vitelline membrane outer layer 1 homolog
AliasesERGA6350; PRO21055
GeneCards (Weizmann)VMO1
Ensembl hg19 (Hinxton)ENSG00000182853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182853 [Gene_View]  chr17:4785285-4786434 [Contig_View]  VMO1 [Vega]
ICGC DataPortalENSG00000182853
TCGA cBioPortalVMO1
AceView (NCBI)VMO1
Genatlas (Paris)VMO1
WikiGenes284013
SOURCE (Princeton)VMO1
Genetics Home Reference (NIH)VMO1
Genomic and cartography
GoldenPath hg38 (UCSC)VMO1  -     chr17:4785285-4786434 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VMO1  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblVMO1 - 17p13.2 [CytoView hg19]  VMO1 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIVMO1 [Mapview hg19]  VMO1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF521892 AY359099 BC038467 BC104194 BC104195
RefSeq transcript (Entrez)NM_001144939 NM_001144940 NM_001144941 NM_182566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VMO1
Cluster EST : UnigeneHs.122561 [ NCBI ]
CGAP (NCI)Hs.122561
Alternative Splicing GalleryENSG00000182853
Gene ExpressionVMO1 [ NCBI-GEO ]   VMO1 [ EBI - ARRAY_EXPRESS ]   VMO1 [ SEEK ]   VMO1 [ MEM ]
Gene Expression Viewer (FireBrowse)VMO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284013
GTEX Portal (Tissue expression)VMO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5L0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5L0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5L0
Splice isoforms : SwissVarQ7Z5L0
PhosPhoSitePlusQ7Z5L0
Domains : Interpro (EBI)VOMI   
Domain families : Pfam (Sanger)VOMI (PF03762)   
Domain families : Pfam (NCBI)pfam03762   
Conserved Domain (NCBI)VMO1
DMDM Disease mutations284013
Blocks (Seattle)VMO1
SuperfamilyQ7Z5L0
Human Protein AtlasENSG00000182853
Peptide AtlasQ7Z5L0
HPRD17333
IPIIPI00216914   IPI00794977   IPI00789840   IPI00383400   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5L0
IntAct (EBI)Q7Z5L0
FunCoupENSG00000182853
BioGRIDVMO1
STRING (EMBL)VMO1
ZODIACVMO1
Ontologies - Pathways
QuickGOQ7Z5L0
Ontology : AmiGOmolecular_function  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  extracellular exosome  
NDEx NetworkVMO1
Atlas of Cancer Signalling NetworkVMO1
Wikipedia pathwaysVMO1
Orthology - Evolution
OrthoDB284013
GeneTree (enSembl)ENSG00000182853
Phylogenetic Trees/Animal Genes : TreeFamVMO1
HOVERGENQ7Z5L0
HOGENOMQ7Z5L0
Homologs : HomoloGeneVMO1
Homology/Alignments : Family Browser (UCSC)VMO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVMO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VMO1
dbVarVMO1
ClinVarVMO1
1000_GenomesVMO1 
Exome Variant ServerVMO1
ExAC (Exome Aggregation Consortium)VMO1 (select the gene name)
Genetic variants : HAPMAP284013
Genomic Variants (DGV)VMO1 [DGVbeta]
DECIPHERVMO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVMO1 
Mutations
ICGC Data PortalVMO1 
TCGA Data PortalVMO1 
Broad Tumor PortalVMO1
OASIS PortalVMO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVMO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVMO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VMO1
DgiDB (Drug Gene Interaction Database)VMO1
DoCM (Curated mutations)VMO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VMO1 (select a term)
intoGenVMO1
Cancer3DVMO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVMO1
Genetic Testing Registry VMO1
NextProtQ7Z5L0 [Medical]
TSGene284013
GENETestsVMO1
Target ValidationVMO1
Huge Navigator VMO1 [HugePedia]
snp3D : Map Gene to Disease284013
BioCentury BCIQVMO1
ClinGenVMO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284013
Chemical/Pharm GKB GenePA142670619
Clinical trialVMO1
Miscellaneous
canSAR (ICR)VMO1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVMO1
EVEXVMO1
GoPubMedVMO1
iHOPVMO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:43:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.