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VN1R17P (vomeronasal 1 receptor 17 pseudogene)

Identity

Other aliasGPCR
HGNC (Hugo) VN1R17P
LocusID (NCBI) 441931
Atlas_Id 55966
Location 1q44  [Link to chromosome band 1q44]
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)VN1R17P   37331
Cards
Entrez_Gene (NCBI)VN1R17P  441931  vomeronasal 1 receptor 17 pseudogene
AliasesGPCR
GeneCards (Weizmann)VN1R17P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  VN1R17P [Vega]
TCGA cBioPortalVN1R17P
AceView (NCBI)VN1R17P
Genatlas (Paris)VN1R17P
WikiGenes441931
SOURCE (Princeton)VN1R17P
Genetics Home Reference (NIH)VN1R17P
Genomic and cartography
GoldenPath hg38 (UCSC)VN1R17P  -  
GoldenPath hg19 (UCSC)VN1R17P  -  
EnsemblVN1R17P - [CytoView hg19]  VN1R17P - [CytoView hg38]
Mapping of homologs : NCBIVN1R17P [Mapview hg19]  VN1R17P [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001025075
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VN1R17P
Gene ExpressionVN1R17P [ NCBI-GEO ]   VN1R17P [ EBI - ARRAY_EXPRESS ]   VN1R17P [ SEEK ]   VN1R17P [ MEM ]
Gene Expression Viewer (FireBrowse)VN1R17P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441931
GTEX Portal (Tissue expression)VN1R17P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDU5
Splice isoforms : SwissVarQ8TDU5
PhosPhoSitePlusQ8TDU5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM    Vmron_rcpt_1   
Domain families : Pfam (Sanger)V1R (PF03402)   
Domain families : Pfam (NCBI)pfam03402   
Conserved Domain (NCBI)VN1R17P
DMDM Disease mutations441931
Blocks (Seattle)VN1R17P
SuperfamilyQ8TDU5
Peptide AtlasQ8TDU5
IPIIPI00152618   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDU5
IntAct (EBI)Q8TDU5
BioGRIDVN1R17P
STRING (EMBL)VN1R17P
ZODIACVN1R17P
Ontologies - Pathways
QuickGOQ8TDU5
Ontology : AmiGOplasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  pheromone receptor activity  response to pheromone  
Ontology : EGO-EBIplasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  pheromone receptor activity  response to pheromone  
NDEx NetworkVN1R17P
Atlas of Cancer Signalling NetworkVN1R17P
Wikipedia pathwaysVN1R17P
Orthology - Evolution
OrthoDB441931
Phylogenetic Trees/Animal Genes : TreeFamVN1R17P
HOVERGENQ8TDU5
HOGENOMQ8TDU5
Homologs : HomoloGeneVN1R17P
Homology/Alignments : Family Browser (UCSC)VN1R17P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVN1R17P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VN1R17P
dbVarVN1R17P
ClinVarVN1R17P
1000_GenomesVN1R17P 
Exome Variant ServerVN1R17P
ExAC (Exome Aggregation Consortium)VN1R17P (select the gene name)
Genetic variants : HAPMAP441931
Genomic Variants (DGV)VN1R17P [DGVbeta]
DECIPHERVN1R17P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVN1R17P 
Mutations
ICGC Data PortalVN1R17P 
TCGA Data PortalVN1R17P 
Broad Tumor PortalVN1R17P
OASIS PortalVN1R17P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDVN1R17P
BioMutasearch VN1R17P
DgiDB (Drug Gene Interaction Database)VN1R17P
DoCM (Curated mutations)VN1R17P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VN1R17P (select a term)
intoGenVN1R17P
Cancer3DVN1R17P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVN1R17P
Genetic Testing Registry VN1R17P
NextProtQ8TDU5 [Medical]
TSGene441931
GENETestsVN1R17P
Target ValidationVN1R17P
Huge Navigator VN1R17P [HugePedia]
snp3D : Map Gene to Disease441931
BioCentury BCIQVN1R17P
ClinGenVN1R17P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441931
Clinical trialVN1R17P
Miscellaneous
canSAR (ICR)VN1R17P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVN1R17P
EVEXVN1R17P
GoPubMedVN1R17P
iHOPVN1R17P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:38:00 CEST 2017

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