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VN1R2 (vomeronasal 1 receptor 2)

Identity

Alias_symbol (synonym)V1RL2
Other alias
HGNC (Hugo) VN1R2
LocusID (NCBI) 317701
Atlas_Id 75616
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53258292 and ends at 53259602 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VN1R2   19872
Cards
Entrez_Gene (NCBI)VN1R2  317701  vomeronasal 1 receptor 2
AliasesV1RL2
GeneCards (Weizmann)VN1R2
Ensembl hg19 (Hinxton)ENSG00000196131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196131 [Gene_View]  chr19:53258292-53259602 [Contig_View]  VN1R2 [Vega]
ICGC DataPortalENSG00000196131
TCGA cBioPortalVN1R2
AceView (NCBI)VN1R2
Genatlas (Paris)VN1R2
WikiGenes317701
SOURCE (Princeton)VN1R2
Genetics Home Reference (NIH)VN1R2
Genomic and cartography
GoldenPath hg38 (UCSC)VN1R2  -     chr19:53258292-53259602 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VN1R2  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblVN1R2 - 19q13.42 [CytoView hg19]  VN1R2 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIVN1R2 [Mapview hg19]  VN1R2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC130356 BC130358 HQ258205
RefSeq transcript (Entrez)NM_173856
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VN1R2
Cluster EST : UnigeneHs.553684 [ NCBI ]
CGAP (NCI)Hs.553684
Alternative Splicing GalleryENSG00000196131
Gene ExpressionVN1R2 [ NCBI-GEO ]   VN1R2 [ EBI - ARRAY_EXPRESS ]   VN1R2 [ SEEK ]   VN1R2 [ MEM ]
Gene Expression Viewer (FireBrowse)VN1R2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317701
GTEX Portal (Tissue expression)VN1R2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFZ6
Splice isoforms : SwissVarQ8NFZ6
PhosPhoSitePlusQ8NFZ6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM    Vmron_rcpt_1   
Domain families : Pfam (Sanger)V1R (PF03402)   
Domain families : Pfam (NCBI)pfam03402   
Conserved Domain (NCBI)VN1R2
DMDM Disease mutations317701
Blocks (Seattle)VN1R2
SuperfamilyQ8NFZ6
Human Protein AtlasENSG00000196131
Peptide AtlasQ8NFZ6
HPRD18286
IPIIPI00176426   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFZ6
IntAct (EBI)Q8NFZ6
FunCoupENSG00000196131
BioGRIDVN1R2
STRING (EMBL)VN1R2
ZODIACVN1R2
Ontologies - Pathways
QuickGOQ8NFZ6
Ontology : AmiGOplasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  pheromone receptor activity  response to pheromone  
Ontology : EGO-EBIplasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  pheromone receptor activity  response to pheromone  
NDEx NetworkVN1R2
Atlas of Cancer Signalling NetworkVN1R2
Wikipedia pathwaysVN1R2
Orthology - Evolution
OrthoDB317701
GeneTree (enSembl)ENSG00000196131
Phylogenetic Trees/Animal Genes : TreeFamVN1R2
HOVERGENQ8NFZ6
HOGENOMQ8NFZ6
Homologs : HomoloGeneVN1R2
Homology/Alignments : Family Browser (UCSC)VN1R2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVN1R2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VN1R2
dbVarVN1R2
ClinVarVN1R2
1000_GenomesVN1R2 
Exome Variant ServerVN1R2
ExAC (Exome Aggregation Consortium)VN1R2 (select the gene name)
Genetic variants : HAPMAP317701
Genomic Variants (DGV)VN1R2 [DGVbeta]
DECIPHERVN1R2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVN1R2 
Mutations
ICGC Data PortalVN1R2 
TCGA Data PortalVN1R2 
Broad Tumor PortalVN1R2
OASIS PortalVN1R2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVN1R2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVN1R2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VN1R2
DgiDB (Drug Gene Interaction Database)VN1R2
DoCM (Curated mutations)VN1R2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VN1R2 (select a term)
intoGenVN1R2
Cancer3DVN1R2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenVN1R2
Genetic Testing Registry VN1R2
NextProtQ8NFZ6 [Medical]
TSGene317701
GENETestsVN1R2
Huge Navigator VN1R2 [HugePedia]
snp3D : Map Gene to Disease317701
BioCentury BCIQVN1R2
ClinGenVN1R2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317701
Chemical/Pharm GKB GenePA134969616
Clinical trialVN1R2
Miscellaneous
canSAR (ICR)VN1R2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVN1R2
EVEXVN1R2
GoPubMedVN1R2
iHOPVN1R2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:01:11 CEST 2017

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