Atlas of Genetics and Cytogenetics in Oncology and Haematology


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VN1R4 (vomeronasal 1 receptor 4)

Identity

Alias_symbol (synonym)V1RL4
Other alias
HGNC (Hugo) VN1R4
LocusID (NCBI) 317703
Atlas_Id 75618
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53266760 and ends at 53267665 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VN1R4   19871
Cards
Entrez_Gene (NCBI)VN1R4  317703  vomeronasal 1 receptor 4
AliasesV1RL4
GeneCards (Weizmann)VN1R4
Ensembl hg19 (Hinxton)ENSG00000228567 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228567 [Gene_View]  chr19:53266760-53267665 [Contig_View]  VN1R4 [Vega]
ICGC DataPortalENSG00000228567
TCGA cBioPortalVN1R4
AceView (NCBI)VN1R4
Genatlas (Paris)VN1R4
WikiGenes317703
SOURCE (Princeton)VN1R4
Genetics Home Reference (NIH)VN1R4
Genomic and cartography
GoldenPath hg38 (UCSC)VN1R4  -     chr19:53266760-53267665 -  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VN1R4  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblVN1R4 - 19q13.42 [CytoView hg19]  VN1R4 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIVN1R4 [Mapview hg19]  VN1R4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC104935 BC104939
RefSeq transcript (Entrez)NM_173857
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VN1R4
Cluster EST : UnigeneHs.553685 [ NCBI ]
CGAP (NCI)Hs.553685
Alternative Splicing GalleryENSG00000228567
Gene ExpressionVN1R4 [ NCBI-GEO ]   VN1R4 [ EBI - ARRAY_EXPRESS ]   VN1R4 [ SEEK ]   VN1R4 [ MEM ]
Gene Expression Viewer (FireBrowse)VN1R4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)317703
GTEX Portal (Tissue expression)VN1R4
Human Protein AtlasENSG00000228567-VN1R4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5H5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5H5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5H5
Splice isoforms : SwissVarQ7Z5H5
PhosPhoSitePlusQ7Z5H5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM    Vmron_rcpt_1   
Domain families : Pfam (Sanger)V1R (PF03402)   
Domain families : Pfam (NCBI)pfam03402   
Conserved Domain (NCBI)VN1R4
DMDM Disease mutations317703
Blocks (Seattle)VN1R4
SuperfamilyQ7Z5H5
Human Protein Atlas [tissue]ENSG00000228567-VN1R4 [tissue]
Peptide AtlasQ7Z5H5
HPRD18287
IPIIPI00152613   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5H5
IntAct (EBI)Q7Z5H5
FunCoupENSG00000228567
BioGRIDVN1R4
STRING (EMBL)VN1R4
ZODIACVN1R4
Ontologies - Pathways
QuickGOQ7Z5H5
Ontology : AmiGOplasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  pheromone receptor activity  response to pheromone  
Ontology : EGO-EBIplasma membrane  G-protein coupled receptor signaling pathway  sensory perception of chemical stimulus  integral component of membrane  pheromone receptor activity  response to pheromone  
NDEx NetworkVN1R4
Atlas of Cancer Signalling NetworkVN1R4
Wikipedia pathwaysVN1R4
Orthology - Evolution
OrthoDB317703
GeneTree (enSembl)ENSG00000228567
Phylogenetic Trees/Animal Genes : TreeFamVN1R4
HOVERGENQ7Z5H5
HOGENOMQ7Z5H5
Homologs : HomoloGeneVN1R4
Homology/Alignments : Family Browser (UCSC)VN1R4
Gene fusions - Rearrangements
Tumor Fusion PortalVN1R4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVN1R4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VN1R4
dbVarVN1R4
ClinVarVN1R4
1000_GenomesVN1R4 
Exome Variant ServerVN1R4
ExAC (Exome Aggregation Consortium)ENSG00000228567
GNOMAD BrowserENSG00000228567
Genetic variants : HAPMAP317703
Genomic Variants (DGV)VN1R4 [DGVbeta]
DECIPHERVN1R4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVN1R4 
Mutations
ICGC Data PortalVN1R4 
TCGA Data PortalVN1R4 
Broad Tumor PortalVN1R4
OASIS PortalVN1R4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVN1R4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVN1R4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VN1R4
DgiDB (Drug Gene Interaction Database)VN1R4
DoCM (Curated mutations)VN1R4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VN1R4 (select a term)
intoGenVN1R4
Cancer3DVN1R4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVN1R4
MedgenVN1R4
Genetic Testing Registry VN1R4
NextProtQ7Z5H5 [Medical]
TSGene317703
GENETestsVN1R4
Target ValidationVN1R4
Huge Navigator VN1R4 [HugePedia]
snp3D : Map Gene to Disease317703
BioCentury BCIQVN1R4
ClinGenVN1R4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD317703
Chemical/Pharm GKB GenePA134985458
Clinical trialVN1R4
Miscellaneous
canSAR (ICR)VN1R4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVN1R4
EVEXVN1R4
GoPubMedVN1R4
iHOPVN1R4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:18 CET 2017

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