Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VNN1 (vanin 1)

Identity

Alias_symbol (synonym)Tiff66
Other aliasHDLCQ8
HGNC (Hugo) VNN1
LocusID (NCBI) 8876
Atlas_Id 51651
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132680858 and ends at 132714055 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VNN1   12705
Cards
Entrez_Gene (NCBI)VNN1  8876  vanin 1
AliasesHDLCQ8; Tiff66
GeneCards (Weizmann)VNN1
Ensembl hg19 (Hinxton)ENSG00000112299 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112299 [Gene_View]  chr6:132680858-132714055 [Contig_View]  VNN1 [Vega]
ICGC DataPortalENSG00000112299
TCGA cBioPortalVNN1
AceView (NCBI)VNN1
Genatlas (Paris)VNN1
WikiGenes8876
SOURCE (Princeton)VNN1
Genetics Home Reference (NIH)VNN1
Genomic and cartography
GoldenPath hg38 (UCSC)VNN1  -     chr6:132680858-132714055 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VNN1  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblVNN1 - 6q23.2 [CytoView hg19]  VNN1 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBIVNN1 [Mapview hg19]  VNN1 [Mapview hg38]
OMIM603570   
Gene and transcription
Genbank (Entrez)AJ132099 AK095461 AK290425 AK314265 BC096265
RefSeq transcript (Entrez)NM_004666
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VNN1
Cluster EST : UnigeneHs.720659 [ NCBI ]
CGAP (NCI)Hs.720659
Alternative Splicing GalleryENSG00000112299
Gene ExpressionVNN1 [ NCBI-GEO ]   VNN1 [ EBI - ARRAY_EXPRESS ]   VNN1 [ SEEK ]   VNN1 [ MEM ]
Gene Expression Viewer (FireBrowse)VNN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8876
GTEX Portal (Tissue expression)VNN1
Human Protein AtlasENSG00000112299-VNN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95497   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95497  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95497
Splice isoforms : SwissVarO95497
PhosPhoSitePlusO95497
Domaine pattern : Prosite (Expaxy)CN_HYDROLASE (PS50263)   
Domains : Interpro (EBI)Biotinidase_euk    C-N_Hydrolase   
Domain families : Pfam (Sanger)CN_hydrolase (PF00795)   
Domain families : Pfam (NCBI)pfam00795   
Conserved Domain (NCBI)VNN1
DMDM Disease mutations8876
Blocks (Seattle)VNN1
PDB (SRS)4CYF    4CYG    4CYY   
PDB (PDBSum)4CYF    4CYG    4CYY   
PDB (IMB)4CYF    4CYG    4CYY   
PDB (RSDB)4CYF    4CYG    4CYY   
Structural Biology KnowledgeBase4CYF    4CYG    4CYY   
SCOP (Structural Classification of Proteins)4CYF    4CYG    4CYY   
CATH (Classification of proteins structures)4CYF    4CYG    4CYY   
SuperfamilyO95497
Human Protein Atlas [tissue]ENSG00000112299-VNN1 [tissue]
Peptide AtlasO95497
HPRD04651
IPIIPI00030871   
Protein Interaction databases
DIP (DOE-UCLA)O95497
IntAct (EBI)O95497
FunCoupENSG00000112299
BioGRIDVNN1
STRING (EMBL)VNN1
ZODIACVNN1
Ontologies - Pathways
QuickGOO95497
Ontology : AmiGOacute inflammatory response  chronic inflammatory response  extracellular region  plasma membrane  C-terminal protein lipidation  movement of cell or subcellular component  inflammatory response  response to oxidative stress  pantothenate metabolic process  pantothenate metabolic process  integral component of membrane  single organismal cell-cell adhesion  pantetheine hydrolase activity  pantetheine hydrolase activity  anchored component of membrane  positive regulation of T cell differentiation in thymus  azurophil granule membrane  neutrophil degranulation  innate immune response  extracellular exosome  negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway  
Ontology : EGO-EBIacute inflammatory response  chronic inflammatory response  extracellular region  plasma membrane  C-terminal protein lipidation  movement of cell or subcellular component  inflammatory response  response to oxidative stress  pantothenate metabolic process  pantothenate metabolic process  integral component of membrane  single organismal cell-cell adhesion  pantetheine hydrolase activity  pantetheine hydrolase activity  anchored component of membrane  positive regulation of T cell differentiation in thymus  azurophil granule membrane  neutrophil degranulation  innate immune response  extracellular exosome  negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway  
NDEx NetworkVNN1
Atlas of Cancer Signalling NetworkVNN1
Wikipedia pathwaysVNN1
Orthology - Evolution
OrthoDB8876
GeneTree (enSembl)ENSG00000112299
Phylogenetic Trees/Animal Genes : TreeFamVNN1
HOVERGENO95497
HOGENOMO95497
Homologs : HomoloGeneVNN1
Homology/Alignments : Family Browser (UCSC)VNN1
Gene fusions - Rearrangements
Fusion : QuiverVNN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVNN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VNN1
dbVarVNN1
ClinVarVNN1
1000_GenomesVNN1 
Exome Variant ServerVNN1
ExAC (Exome Aggregation Consortium)ENSG00000112299
GNOMAD BrowserENSG00000112299
Genetic variants : HAPMAP8876
Genomic Variants (DGV)VNN1 [DGVbeta]
DECIPHERVNN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVNN1 
Mutations
ICGC Data PortalVNN1 
TCGA Data PortalVNN1 
Broad Tumor PortalVNN1
OASIS PortalVNN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVNN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVNN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VNN1
DgiDB (Drug Gene Interaction Database)VNN1
DoCM (Curated mutations)VNN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VNN1 (select a term)
intoGenVNN1
Cancer3DVNN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603570   
Orphanet
DisGeNETVNN1
MedgenVNN1
Genetic Testing Registry VNN1
NextProtO95497 [Medical]
TSGene8876
GENETestsVNN1
Target ValidationVNN1
Huge Navigator VNN1 [HugePedia]
snp3D : Map Gene to Disease8876
BioCentury BCIQVNN1
ClinGenVNN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8876
Chemical/Pharm GKB GenePA37321
Clinical trialVNN1
Miscellaneous
canSAR (ICR)VNN1 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVNN1
EVEXVNN1
GoPubMedVNN1
iHOPVNN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 5 12:22:35 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.