Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VNN3 (vanin 3)

Identity

Alias_symbol (synonym)HSA238982
Other alias
HGNC (Hugo) VNN3
LocusID (NCBI) 55350
Atlas_Id 75622
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132722787 and ends at 132734765 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VNN3   16431
Cards
Entrez_Gene (NCBI)VNN3  55350  vanin 3
AliasesHSA238982
GeneCards (Weizmann)VNN3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:132722787-132734765 [Contig_View]  VNN3 [Vega]
TCGA cBioPortalVNN3
AceView (NCBI)VNN3
Genatlas (Paris)VNN3
WikiGenes55350
SOURCE (Princeton)VNN3
Genetics Home Reference (NIH)VNN3
Genomic and cartography
GoldenPath hg38 (UCSC)VNN3  -     chr6:132722787-132734765 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VNN3  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblVNN3 - 6q23.2 [CytoView hg19]  VNN3 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBIVNN3 [Mapview hg19]  VNN3 [Mapview hg38]
OMIM606592   
Gene and transcription
Genbank (Entrez)AA461448 AA461622 AB435052 AB435053 AB435054
RefSeq transcript (Entrez)NM_001291702 NM_001291703 NM_018399 NM_078625
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VNN3
Cluster EST : UnigeneHs.183656 [ NCBI ]
CGAP (NCI)Hs.183656
Gene ExpressionVNN3 [ NCBI-GEO ]   VNN3 [ EBI - ARRAY_EXPRESS ]   VNN3 [ SEEK ]   VNN3 [ MEM ]
Gene Expression Viewer (FireBrowse)VNN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55350
GTEX Portal (Tissue expression)VNN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY84
Splice isoforms : SwissVarQ9NY84
Catalytic activity : Enzyme3.5.1.92 [ Enzyme-Expasy ]   3.5.1.923.5.1.92 [ IntEnz-EBI ]   3.5.1.92 [ BRENDA ]   3.5.1.92 [ KEGG ]   
PhosPhoSitePlusQ9NY84
Domaine pattern : Prosite (Expaxy)CN_HYDROLASE (PS50263)   
Domains : Interpro (EBI)Biotinidase_euk    C-N_Hydrolase   
Domain families : Pfam (Sanger)CN_hydrolase (PF00795)   
Domain families : Pfam (NCBI)pfam00795   
Conserved Domain (NCBI)VNN3
DMDM Disease mutations55350
Blocks (Seattle)VNN3
SuperfamilyQ9NY84
Peptide AtlasQ9NY84
HPRD09420
IPIIPI00607779   IPI00020772   IPI00895918   IPI00028778   IPI00895838   IPI00871917   IPI00954969   IPI00895786   IPI01013911   IPI01014352   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY84
IntAct (EBI)Q9NY84
BioGRIDVNN3
STRING (EMBL)VNN3
ZODIACVNN3
Ontologies - Pathways
QuickGOQ9NY84
Ontology : AmiGOcellular_component  extracellular region  plasma membrane  C-terminal protein lipidation  biological_process  pantothenate metabolic process  pantetheine hydrolase activity  pantetheine hydrolase activity  anchored component of membrane  
Ontology : EGO-EBIcellular_component  extracellular region  plasma membrane  C-terminal protein lipidation  biological_process  pantothenate metabolic process  pantetheine hydrolase activity  pantetheine hydrolase activity  anchored component of membrane  
Pathways : KEGGPantothenate and CoA biosynthesis    Nicotinate and nicotinamide metabolism    Caprolactam degradation   
NDEx NetworkVNN3
Atlas of Cancer Signalling NetworkVNN3
Wikipedia pathwaysVNN3
Orthology - Evolution
OrthoDB55350
Phylogenetic Trees/Animal Genes : TreeFamVNN3
HOVERGENQ9NY84
HOGENOMQ9NY84
Homologs : HomoloGeneVNN3
Homology/Alignments : Family Browser (UCSC)VNN3
Gene fusions - Rearrangements
Fusion : QuiverVNN3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVNN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VNN3
dbVarVNN3
ClinVarVNN3
1000_GenomesVNN3 
Exome Variant ServerVNN3
Genetic variants : HAPMAP55350
Genomic Variants (DGV)VNN3 [DGVbeta]
DECIPHERVNN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVNN3 
Mutations
ICGC Data PortalVNN3 
TCGA Data PortalVNN3 
Broad Tumor PortalVNN3
OASIS PortalVNN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVNN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVNN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VNN3
DgiDB (Drug Gene Interaction Database)VNN3
DoCM (Curated mutations)VNN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VNN3 (select a term)
intoGenVNN3
Cancer3DVNN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606592   
Orphanet
DisGeNETVNN3
MedgenVNN3
Genetic Testing Registry VNN3
NextProtQ9NY84 [Medical]
TSGene55350
GENETestsVNN3
Target ValidationVNN3
Huge Navigator VNN3 [HugePedia]
snp3D : Map Gene to Disease55350
BioCentury BCIQVNN3
ClinGenVNN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55350
Chemical/Pharm GKB GenePA38138
Clinical trialVNN3
Miscellaneous
canSAR (ICR)VNN3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVNN3
EVEXVNN3
GoPubMedVNN3
iHOPVNN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:58:00 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.