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VPREB1 (pre-B lymphocyte 1)

Identity

Alias_symbol (synonym)VpreB
CD179A
Other aliasCD179a
IGI
IGVPB
VPREB
HGNC (Hugo) VPREB1
LocusID (NCBI) 7441
Atlas_Id 42794
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22599192 and ends at 22599927 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BCL9 (1q21.2) / VPREB1 (22q11.22)CBX7 (22q13.1) / VPREB1 (22q11.22)CBX7 22q13.1 / VPREB1 22q11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VPREB1   12709
Cards
Entrez_Gene (NCBI)VPREB1  7441  pre-B lymphocyte 1
AliasesCD179a; IGI; IGVPB; VPREB
GeneCards (Weizmann)VPREB1
Ensembl hg19 (Hinxton)ENSG00000169575 [Gene_View]  chr22:22599192-22599927 [Contig_View]  VPREB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169575 [Gene_View]  chr22:22599192-22599927 [Contig_View]  VPREB1 [Vega]
ICGC DataPortalENSG00000169575
TCGA cBioPortalVPREB1
AceView (NCBI)VPREB1
Genatlas (Paris)VPREB1
WikiGenes7441
SOURCE (Princeton)VPREB1
Genetics Home Reference (NIH)VPREB1
Genomic and cartography
GoldenPath hg19 (UCSC)VPREB1  -     chr22:22599192-22599927 +  22q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)VPREB1  -     22q11.22   [Description]    (hg38-Dec_2013)
EnsemblVPREB1 - 22q11.22 [CytoView hg19]  VPREB1 - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIVPREB1 [Mapview hg19]  VPREB1 [Mapview hg38]
OMIM605141   
Gene and transcription
Genbank (Entrez)BC017922 BC152786 BG502270 CR456609 CU013205
RefSeq transcript (Entrez)NM_001303509 NM_007128
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_000002 NG_029387 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)VPREB1
Cluster EST : UnigeneHs.247979 [ NCBI ]
CGAP (NCI)Hs.247979
Alternative Splicing GalleryENSG00000169575
Gene ExpressionVPREB1 [ NCBI-GEO ]   VPREB1 [ EBI - ARRAY_EXPRESS ]   VPREB1 [ SEEK ]   VPREB1 [ MEM ]
Gene Expression Viewer (FireBrowse)VPREB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7441
GTEX Portal (Tissue expression)VPREB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12018   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP12018  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP12018
Splice isoforms : SwissVarP12018
PhosPhoSitePlusP12018
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)VPREB1
DMDM Disease mutations7441
Blocks (Seattle)VPREB1
PDB (SRS)2H32    2H3N    3BJ9   
PDB (PDBSum)2H32    2H3N    3BJ9   
PDB (IMB)2H32    2H3N    3BJ9   
PDB (RSDB)2H32    2H3N    3BJ9   
Structural Biology KnowledgeBase2H32    2H3N    3BJ9   
SCOP (Structural Classification of Proteins)2H32    2H3N    3BJ9   
CATH (Classification of proteins structures)2H32    2H3N    3BJ9   
SuperfamilyP12018
Human Protein AtlasENSG00000169575
Peptide AtlasP12018
HPRD05505
IPIIPI00021712   IPI00878563   
Protein Interaction databases
DIP (DOE-UCLA)P12018
IntAct (EBI)P12018
FunCoupENSG00000169575
BioGRIDVPREB1
STRING (EMBL)VPREB1
ZODIACVPREB1
Ontologies - Pathways
QuickGOP12018
Ontology : AmiGOimmunoglobulin production  extracellular space  immune response  
Ontology : EGO-EBIimmunoglobulin production  extracellular space  immune response  
NDEx NetworkVPREB1
Atlas of Cancer Signalling NetworkVPREB1
Wikipedia pathwaysVPREB1
Orthology - Evolution
OrthoDB7441
GeneTree (enSembl)ENSG00000169575
Phylogenetic Trees/Animal Genes : TreeFamVPREB1
HOVERGENP12018
HOGENOMP12018
Homologs : HomoloGeneVPREB1
Homology/Alignments : Family Browser (UCSC)VPREB1
Gene fusions - Rearrangements
Fusion : MitelmanCBX7/VPREB1 [22q13.1/22q11.22]  [t(22;22)(q11;q13)]  
Fusion: TCGACBX7 22q13.1 VPREB1 22q11.22 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPREB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPREB1
dbVarVPREB1
ClinVarVPREB1
1000_GenomesVPREB1 
Exome Variant ServerVPREB1
ExAC (Exome Aggregation Consortium)VPREB1 (select the gene name)
Genetic variants : HAPMAP7441
Genomic Variants (DGV)VPREB1 [DGVbeta]
DECIPHER (Syndromes)22:22599192-22599927  ENSG00000169575
CONAN: Copy Number AnalysisVPREB1 
Mutations
ICGC Data PortalVPREB1 
TCGA Data PortalVPREB1 
Broad Tumor PortalVPREB1
OASIS PortalVPREB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPREB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDVPREB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VPREB1
DgiDB (Drug Gene Interaction Database)VPREB1
DoCM (Curated mutations)VPREB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPREB1 (select a term)
intoGenVPREB1
Cancer3DVPREB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605141   
Orphanet
MedgenVPREB1
Genetic Testing Registry VPREB1
NextProtP12018 [Medical]
TSGene7441
GENETestsVPREB1
Huge Navigator VPREB1 [HugePedia]
snp3D : Map Gene to Disease7441
BioCentury BCIQVPREB1
ClinGenVPREB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7441
Chemical/Pharm GKB GenePA37324
Clinical trialVPREB1
Miscellaneous
canSAR (ICR)VPREB1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPREB1
EVEXVPREB1
GoPubMedVPREB1
iHOPVPREB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:33:55 CET 2017

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